View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_12 (Length: 518)
Name: NF12931_high_12
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_12 |
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| [»] scaffold0945 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 24546492 - 24546007
Alignment:
| Q |
18 |
cgatgtacttttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttat |
117 |
Q |
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| T |
24546492 |
cgatgtacttttaacgcccacccaaatcttcattccggtacaagatggtattttttgctttgcattcaccagcacttttagtaacgaatatggcatttat |
24546393 |
T |
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| Q |
118 |
ggaaaccatgctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaacgtacaagatgcacctt |
217 |
Q |
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| T |
24546392 |
ggaaaccatgctcagtcaaattatttgattgggtttgatttggaaaagcaactggtatctttcaaggcgacagattgcaccaacctacaagatgcacctt |
24546293 |
T |
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| Q |
218 |
ctattaatggggtgctccccaatgttctttctgcacccatgtaattgctccttttaccccttttactaattacattacaaaattaagctctctattatga |
317 |
Q |
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| T |
24546292 |
ctattaatggggtgctccccaatgttctttctgcacccatgtacttgctccttttaccccttttactaattatattacaaaattaagctctctattatga |
24546193 |
T |
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| Q |
318 |
tataaatggcatggccataattgcttctgttttcgttctttctacaaacccatgaatgcttcttttatttggaccggtaattccatagtgtttgcttcaa |
417 |
Q |
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|||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
24546192 |
tataaatgacatggccatcattgcttcttttttcgttctttctacaaacccatgaatgcttctttt-tttggactggtaattccatagtgtttgcttcaa |
24546094 |
T |
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| Q |
418 |
tttagagtagactcagattaacaaagattgacttcatctttaagattaggctgaagagcctcttattggttttacacttcaattata |
504 |
Q |
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| T |
24546093 |
tttagagtagactcaaattaacaaagattgacttcatctttaagattaggctgaagagcctcttattggttttacacttcaattata |
24546007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 24539114 - 24538936
Alignment:
| Q |
19 |
gatgtacttttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatg |
118 |
Q |
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|||||||| ||||||||| ||||||| ||||||||||||||||||| || ||||||||| ||| || | |||| | | | ||||||| || ||||| |
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| T |
24539114 |
gatgtactcttaacgcccgctcaaatgttcattccggtacaagatgataatttctgcttcgcagtcttcgacact---aatgaagaatatgtcacttatg |
24539018 |
T |
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| Q |
119 |
gaaaccatgctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaa |
200 |
Q |
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| T |
24539017 |
gaaactatgcccagtcaaactatttgattgggtttgatttggaaaggcaggtggtttctttcaaggcaacagattgcaccaa |
24538936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 386 - 632
Alignment:
| Q |
19 |
gatgtacttttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatg |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
386 |
gatgtacttttaacgccaactcaaatcttcattccggtacaatatggtattttctgctttgcattcaccagctcttttagtaacgaatatggcacttatg |
485 |
T |
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| Q |
119 |
gaaaccatgctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaacgtacaagatgcaccttc |
218 |
Q |
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| T |
486 |
gaagctatgtgcagtcaaattatttgattgggtttgatttggaaaagcaagtggtttctttcaaggccacagattgcaccaacttacaagatgcacc--- |
582 |
T |
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| Q |
219 |
tattaatggggtgctccccaatgttctttctgcacccatgtaattgctccttttac |
274 |
Q |
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| T |
583 |
------tagggtgctccccaattttctttcttcacccatgtacttgttccttttac |
632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 502
Target Start/End: Original strand, 722 - 855
Alignment:
| Q |
363 |
aaacccatgaatgcttcttttatttggac-cggtaattccatagtgtttgcttcaatttagagtagactcagattaacaaagattgacttcatctttaag |
461 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||| ||| | ||||||||||||||||||||| |
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| T |
722 |
aaacccatgaatgcttcttttatttggacttggtcattccaaagtgtttgcttcaatt-----tagactcaaatt-agtaagattgacttcatctttaag |
815 |
T |
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| Q |
462 |
attaggctgaagagcctcttattggttttacacttcaatta |
502 |
Q |
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| T |
816 |
attggacttaa-agtctcttataggttttatgcttcaatta |
855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 1667944 - 1667880
Alignment:
| Q |
136 |
aattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacagattgcaccaa |
200 |
Q |
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| T |
1667944 |
aattatttaataggatttgatttggatagacaagtggtctctttcaagccaacagattgtaccaa |
1667880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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