View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12931_high_13 (Length: 505)
Name: NF12931_high_13
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Original strand, 29318592 - 29319073
Alignment:
| Q |
17 |
taccttcttcgagatttcaatcagagctcgcacaatccagaaagttatgcctctttttgcgtcattagttttgtcacatactttaagtgagattactaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29318592 |
taccttcttcgagatttcaatcagagctcgcacaatccagaaagttatgcctctttttgcgtcattagttttgtcacatactttaagtgagattactaag |
29318691 |
T |
|
| Q |
117 |
tttggaagacctaaaaacagaaagtaagttaatttatcaaaaatggcttaaacagaaatttcaagattttaaattgaactcatataaattaaatttatag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29318692 |
tttggaagacctaaaaacagaaagtaagttaatttatcaaaaatggcttaaacagaaatttcaagattttaaattgaaatcatataaattaaatttatag |
29318791 |
T |
|
| Q |
217 |
tcacctaaaatagaagccttgcgaagttgagaattagaacaaccaagcaagcgcataaacattgtagcgacctaaacatttaaatacatgtttaatcagt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29318792 |
tcacctaaaatagaagccttgcgaagttgagaattagaacaaccaagcaagcgcataaacattgtagcgacctaaacatttaaatacatgtttaatcagt |
29318891 |
T |
|
| Q |
317 |
tgcaggtttgcattttagctagaaacctctacataaaccagaaacatcagatctatcaaacaaacctcgccaatgtggggggaaaagtttatagatgacc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29318892 |
tgcaggtttgcattttagctagaaacctctacataaaccagaaacattagatctatcaagcaaacctcgccaatgtggggggaaaagtttatagatgacc |
29318991 |
T |
|
| Q |
417 |
gaacagcacaatatgacaatgtattacaagcctgaactatcatagtttcaaccaaattcttctgaacgtaatccttcatctc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
29318992 |
gaacagcacaatatgacaatgtattacaagcctgaactatcatagtttcaaccaaattcttctgaacgtcatccttgatctc |
29319073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 85 - 473
Target Start/End: Original strand, 29301038 - 29301423
Alignment:
| Q |
85 |
ttttgtcacatactttaagtgagattactaagtttggaagacctaaaaacagaaagtaagttaatttatcaaaaatggcttaaacagaaatttcaagatt |
184 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||||||||| ||| | ||||||| | | |||| ||||| |||||| |||| |||||| || || |
|
|
| T |
29301038 |
ttttgtcagctactttaagtgagagtaataggtttggaagacctagaaatacaaagtaaataattttaccaaaa-tggctttaacacaaatttaaa--tt |
29301134 |
T |
|
| Q |
185 |
ttaaattgaactcatataaattaaatttatagtcacctaaaatagaagccttgcgaagttgagaattagaacaaccaagcaagcgcataaacattgtagc |
284 |
Q |
| |
|
|||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||||| || |
|
|
| T |
29301135 |
ttaagttgaactcgaataatttaaatttatattcacctaaaatagaagccttgcgaatttgaaaactagaacaaccaagcaagcgcacaaacattgcagt |
29301234 |
T |
|
| Q |
285 |
gacctaaacatttaaatacatgtttaatcagttgcaggtttgcattttagctagaaacctctacataaaccagaaacatcagatctatcaaacaaacctc |
384 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| ||||| ||| || |||||| ||||||||||| || |||||| ||||||||| ||| |||| |
|
|
| T |
29301235 |
gacctaaacaattaaatacatgtttaataagttgcatgtttgtttttaaggtagaaaactctacataaatcacaaacataagatctatcgaacttacctt |
29301334 |
T |
|
| Q |
385 |
gccaatgtggggggaaaagtttatagatgaccgaacagcacaatatgacaatgtattacaagcctgaactatcatagtttcaaccaaat |
473 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
29301335 |
gccagtgtgaagggaaaactttatagatgaccgaacagcacaatatgagaacgtattacaagcctgaactatcatggtttcaactaaat |
29301423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 67 - 472
Target Start/End: Original strand, 29329406 - 29329796
Alignment:
| Q |
67 |
ctctttttgcgtcattagttttgtcacatactttaagtgagattactaagtttggaagacctaaaaacagaaagtaagttaatttatcaaaaatggctta |
166 |
Q |
| |
|
||||||| | ||||||| ||||||||| || | || ||||| || || ||||||||||||||| ||||||||| ||| ||||| |||| | | || |
|
|
| T |
29329406 |
ctcttttagtgtcattacttttgtcacctaatatagctgagagtaatagttttggaagacctaaatacagaaagtggatta-tttataaaaattagtttt |
29329504 |
T |
|
| Q |
167 |
aacagaaatttcaagattttaaattgaactcatataaattaaatttatagtcacctaaaatagaagccttgcgaagttgagaattagaacaaccaagcaa |
266 |
Q |
| |
|
||| |||||||||||| |||| ||||||| | |||| ||||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||| |
|
|
| T |
29329505 |
aacccaaatttcaagatattaatttgaactaaaataac--aaatttatattcacctaaaatagaagccttgcgaatttcagaactagaacaaccaagcaa |
29329602 |
T |
|
| Q |
267 |
gcgcataaacattgtagcgacctaaacatttaaatacatgtttaatcagttgcaggtttgcattttagctagaaacctctacataaaccagaaacatcag |
366 |
Q |
| |
|
|| |||||||||| || |||||||||||||||||||||||||||| ||| || || ||| ||||||||||| || ||||| || |
|
|
| T |
29329603 |
acgtataaacattggagtgacctaaacatttaaatacatgtttaattagt--cacgt--------------gaagtctctacataaatcacaaacaacat |
29329686 |
T |
|
| Q |
367 |
atc----tatcaaacaaacctcgccaatgtggggggaaaagtttatagatgaccgaacagcacaatatgacaatgtattacaagcctgaactatcatagt |
462 |
Q |
| |
|
||| |||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |||| || |
|
|
| T |
29329687 |
atctatatatcgaaccaaccttggcaatgtggggggaaaagtttatagatgaccgaacagcacaatgtgacaatgtattacaagcccgggctctcattgt |
29329786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 42284940 - 42284872
Alignment:
| Q |
221 |
ctaaaatagaagccttgcgaagttgagaattagaacaaccaagcaagcgcataaacattgtagcgacct |
289 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||||||||| | |||||||||| || ||||| |
|
|
| T |
42284940 |
ctaaaatagaagccttgcgaatttcagaactagaacaaccaagcaaacatataaacattggagtgacct |
42284872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University