View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_17 (Length: 461)
Name: NF12931_high_17
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 168 - 442
Target Start/End: Original strand, 25975754 - 25976028
Alignment:
| Q |
168 |
ctacacattgttaattagtttataataaatgactttcgattaatcttgaagccgtattaaatgattaatacatctttggtattttgtgatcataaccaag |
267 |
Q |
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| T |
25975754 |
ctacatattgttaattagtttataataaatgactttcgattaatcttgaagccgtattaaatgattaatacatctttggtattttgtgatcataactaag |
25975853 |
T |
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| Q |
268 |
gcaaaaagaaactaaaactaaaactccatgcatgtctttatccatagaagtcatccatgttgagaaaacaatgtcgatcttttgcatccaaaaatatttg |
367 |
Q |
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| T |
25975854 |
gcaaaaagaaactaaaactaaaactctatgcatgtctttatccatagaagtcatccatgttgagaaaacaatgtcgatcttttgcatccaaaaatatttg |
25975953 |
T |
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| Q |
368 |
tgacttttagaggttataaagagattcatttgtttttagtgaaaaagaatatagtttacgacttttggtatctcc |
442 |
Q |
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| T |
25975954 |
tgacttttagaggttataaagagattcatttgtttttagtgaaaaagaatatagtttacgacttttggtatctcc |
25976028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 25975593 - 25975718
Alignment:
| Q |
34 |
ttaaaaagctattgaatttgaataaaatttggcttttagacatccctaggggataatttctatgtacattattacttcaa--nnnnnnnnctatttacat |
131 |
Q |
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| T |
25975593 |
ttaaaaagctattgaaattgaataaaatttggcttttagacatccctaggggataatttctatgaacagtattatttcaattttttttttctatgtacat |
25975692 |
T |
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| Q |
132 |
tatattatacgcattgtttttgatat |
157 |
Q |
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| T |
25975693 |
tatattatacgcgttgtttttgatat |
25975718 |
T |
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