View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12931_high_24 (Length: 393)

Name: NF12931_high_24
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12931_high_24
NF12931_high_24
[»] chr6 (14 HSPs)
chr6 (196-375)||(11197105-11197286)
chr6 (196-371)||(11241055-11241232)
chr6 (199-361)||(11276339-11276503)
chr6 (196-361)||(11170952-11171119)
chr6 (196-375)||(11156652-11156833)
chr6 (196-375)||(11209774-11209955)
chr6 (62-143)||(19292923-19293004)
chr6 (196-314)||(11161531-11161651)
chr6 (196-314)||(11200274-11200394)
chr6 (73-141)||(29968709-29968777)
chr6 (196-354)||(11133376-11133536)
chr6 (72-143)||(3418989-3419060)
chr6 (59-142)||(19079191-19079273)
chr6 (82-133)||(10172518-10172570)
[»] chr5 (9 HSPs)
chr5 (62-142)||(37022958-37023038)
chr5 (72-143)||(4428885-4428956)
chr5 (73-141)||(14028302-14028370)
chr5 (73-116)||(28480720-28480763)
chr5 (72-142)||(17549150-17549220)
chr5 (73-142)||(4617162-4617231)
chr5 (72-137)||(37101823-37101888)
chr5 (99-143)||(20645867-20645911)
chr5 (98-142)||(31736925-31736969)
[»] scaffold1207 (1 HSPs)
scaffold1207 (196-308)||(1267-1381)
[»] chr8 (4 HSPs)
chr8 (62-142)||(37044968-37045048)
chr8 (57-103)||(412423-412469)
chr8 (96-135)||(19779880-19779918)
chr8 (81-118)||(39582062-39582099)
[»] chr3 (4 HSPs)
chr3 (73-144)||(8541095-8541166)
chr3 (73-143)||(47278340-47278409)
chr3 (98-142)||(27813512-27813556)
chr3 (82-141)||(42641936-42641995)
[»] scaffold0648 (1 HSPs)
scaffold0648 (73-142)||(4581-4650)
[»] scaffold0274 (1 HSPs)
scaffold0274 (73-142)||(4051-4120)
[»] chr4 (4 HSPs)
chr4 (72-142)||(16204740-16204810)
chr4 (73-142)||(35187620-35187689)
chr4 (73-142)||(27993726-27993795)
chr4 (73-140)||(8823595-8823662)
[»] chr7 (12 HSPs)
chr7 (62-135)||(27400255-27400327)
chr7 (62-142)||(49017022-49017103)
chr7 (62-142)||(11907738-11907820)
chr7 (62-142)||(44970071-44970151)
chr7 (72-142)||(1076070-1076140)
chr7 (73-135)||(23328649-23328711)
chr7 (1-63)||(49016941-49017003)
chr7 (72-142)||(15234913-15234983)
chr7 (81-142)||(4038363-4038424)
chr7 (96-141)||(26942255-26942300)
chr7 (98-143)||(39947181-39947226)
chr7 (98-142)||(44945004-44945048)
[»] chr1 (7 HSPs)
chr1 (73-142)||(46671519-46671588)
chr1 (73-135)||(43671426-43671487)
chr1 (73-143)||(25160641-25160710)
chr1 (73-134)||(16632295-16632360)
chr1 (72-142)||(36565777-36565847)
chr1 (73-119)||(39864444-39864490)
chr1 (94-143)||(3712507-3712556)
[»] chr2 (3 HSPs)
chr2 (73-142)||(43822901-43822970)
chr2 (73-142)||(7497030-7497098)
chr2 (73-135)||(13284269-13284331)
[»] scaffold0006 (2 HSPs)
scaffold0006 (72-143)||(230290-230360)
scaffold0006 (23-60)||(230395-230432)
[»] scaffold0001 (1 HSPs)
scaffold0001 (98-142)||(181481-181525)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 196 - 375
Target Start/End: Original strand, 11197105 - 11197286
Alignment:
Q  196 ttgatccaaggtaagcttcagctatctcgcacatttccgcaaataccatggatgagatttcttcaacatcaaaatggttttcctcgtcattatagtta-- 293  Q
    |||||||||||||||||||||||||||||  |||||  || |||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||      
T  11197105 ttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaac 11197204  T
Q  294 aacaatcatgggtttgtcatttaggtcaccaattactttgaagggccacaacttcatatcaatttgtatgatggggtcgcaa 375  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||| ||| | |||||||    
T  11197205 aacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaa 11197286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 196 - 371
Target Start/End: Complemental strand, 11241232 - 11241055
Alignment:
Q  196 ttgatccaaggtaagcttcagctatctcgcacatttccgcaaataccatggatgagatttcttcaacatcaaaatggttttcctcgtcattatagttaa- 294  Q
    ||||||||||||||||||||||||||| |  |||||  || |||||||| ||||||||||||||| || | ||||| ||||||||||||||||||||||     
T  11241232 ttgatccaaggtaagcttcagctatcttggccatttttgccaataccatcgatgagatttcttcagcagcgaaatgcttttcctcgtcattatagttaac 11241133  T
Q  295 -acaatcatgggtttgtcatttaggtcaccaattactttgaagggccacaacttcatatcaatttgtatgatggggtc 371  Q
     | | ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11241132 aatagtcatgtgtttgtcattcaggtcgccaattactttgaagggccacaacttcatatcactttgtatgatggggtc 11241055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 199 - 361
Target Start/End: Original strand, 11276339 - 11276503
Alignment:
Q  199 atccaaggtaagcttcagctatctcgcacatttccgcaaataccatggatgagatttcttcaacatcaaaatggttttcctcgtcattatagtta--aac 296  Q
    |||||||| | ||||| |||||||||| ||||| ||| |||||||||||||||||||||||| ||  |||||| |||||||||||||||||||||  |||    
T  11276339 atccaaggaaggcttctgctatctcgcgcattttcgccaataccatggatgagatttcttcagcagtaaaatgcttttcctcgtcattatagttaacaac 11276438  T
Q  297 aatcatgggtttgtcatttaggtcaccaattactttgaagggccacaacttcatatcaatttgta 361  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||||    
T  11276439 aatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 11276503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 196 - 361
Target Start/End: Original strand, 11170952 - 11171119
Alignment:
Q  196 ttgatccaaggtaagcttcagctatctcgcacatttccgcaaataccatggatgagatttcttcaacatcaaaatggttttcctcgtcattatagtta-- 293  Q
    ||||||||||| | | ||| |||||||||| ||||| | | |||||||||||||||||||||||| || ||||||| |||||||||||||||||||||      
T  11170952 ttgatccaaggaaggtttctgctatctcgcgcattttcaccaataccatggatgagatttcttcagcagcaaaatgtttttcctcgtcattatagttaac 11171051  T
Q  294 aacaatcatgggtttgtcatttaggtcaccaattactttgaagggccacaacttcatatcaatttgta 361  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||||    
T  11171052 aacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgta 11171119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 196 - 375
Target Start/End: Original strand, 11156652 - 11156833
Alignment:
Q  196 ttgatccaaggtaagcttcagctatctcgcacatttccgcaaataccatggatgagatttcttcaacatcaaaatggttttcctcgtcattatagtta-- 293  Q
    |||||||||||||| ||||||||||||||  |||||  || |||||||| ||||||||||||||| || ||||||| ||||||||||| |||||||||      
T  11156652 ttgatccaaggtaaacttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaac 11156751  T
Q  294 aacaatcatgggtttgtcatttaggtcaccaattactttgaagggccacaacttcatatcaatttgtatgatggggtcgcaa 375  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||||| ||||||||||| |||||| ||| | |||||||    
T  11156752 aacaatcatgggtttgtcattgaggttgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaa 11156833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 196 - 375
Target Start/End: Original strand, 11209774 - 11209955
Alignment:
Q  196 ttgatccaaggtaagcttcagctatctcgcacatttccgcaaataccatggatgagatttcttcaacatcaaaatggttttcctcgtcattatagttaa- 294  Q
    ||||||||||| | ||||| ||| |||| | ||||| ||| |||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||     
T  11209774 ttgatccaaggaaggcttctgctgtctctcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaac 11209873  T
Q  295 -acaatcatgggtttgtcatttaggtcaccaattactttgaagggccacaacttcatatcaatttgtatgatggggtcgcaa 375  Q
     |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| ||| ||  ||||||||||||    
T  11209874 aacaatcatgggtttgtcatttaggtcgccaattactttgaatggccacaacttcacatcactttctactatggggtcgcaa 11209955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 19292923 - 19293004
Alignment:
Q  62 aatgttatggataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctgc 143  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19292923 aatgttatggataatatgctatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccgcccctgc 19293004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 11161531 - 11161651
Alignment:
Q  196 ttgatccaaggtaagcttcagctatctcgcacatttccgcaaataccatggatgagatttcttcaacatcaaaatggttttcctcgtcattatagtta-- 293  Q
    |||||||||||||||||||||| ||||||| |||||  |  |||||||||||||||||||||||  || ||||||| |||||||||||||||||||||      
T  11161531 ttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaac 11161630  T
Q  294 aacaatcatgggtttgtcatt 314  Q
    |||||||||||||||||||||    
T  11161631 aacaatcatgggtttgtcatt 11161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 11200274 - 11200394
Alignment:
Q  196 ttgatccaaggtaagcttcagctatctcgcacatttccgcaaataccatggatgagatttcttcaacatcaaaatggttttcctcgtcattatagtta-- 293  Q
    |||||||||||||||||||||| ||||||| |||||  |  |||||||||||||||||||||||  || ||||||| |||||||||||||||||||||      
T  11200274 ttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaac 11200373  T
Q  294 aacaatcatgggtttgtcatt 314  Q
    |||||||||||||||||||||    
T  11200374 aacaatcatgggtttgtcatt 11200394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 29968709 - 29968777
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccct 141  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  29968709 taatatgatatttatataaaagttggggggtgcagtggcacctgggggtctctaaagagatccgcccct 29968777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 354
Target Start/End: Original strand, 11133376 - 11133536
Alignment:
Q  196 ttgatccaaggtaagcttcagctatctcgcacatttccgcaaataccatggatgagatttcttcaacatcaaaatggttttcctcgtcattatagttaa- 294  Q
    |||||||||||||| |||| || ||||| |  ||||  |  |||||||| ||||| ||||| ||| || ||||||| ||||||||  |||| || || |     
T  11133376 ttgatccaaggtaaacttctgcaatctcacgaatttttgtcaataccattgatgatatttcctcagcagcaaaatgtttttcctctccattgtaattgac 11133475  T
Q  295 -acaatcatgggtttgtcatttaggtcaccaattactttgaagggccacaacttcatatca 354  Q
     |||||  ||||||||||||||| | ||||||||||||| || |||||||| |||||||||    
T  11133476 aacaatattgggtttgtcatttatgccaccaattactttaaatggccacaatttcatatca 11133536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 3419060 - 3418989
Alignment:
Q  72 ataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctgc 143  Q
    ||||||||  |||||||||||   ||||||||||||||||| |||||||||||  ||||||||| |||||||    
T  3419060 ataatatgaaatttatataaaaactggggggtgcagtggcatctgggggtctccaaagagatccgcccctgc 3418989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 19079191 - 19079273
Alignment:
Q  59 tggaatgttatggataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    |||||| | |||| ||||||| ||||||| |||| |||||||| |||| ||||||  | |||||||||||||||||| ||||||    
T  19079191 tggaatatcatggctaatatgatatttatctaaaagttggggg-tgcaatggcactcgtgggtctctgaagagatccgcccctg 19079273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 10172570 - 10172518
Alignment:
Q  82 atttatataaatgttggggggtgcagtggcacctggg-ggtctctgaagagat 133  Q
    ||||||||| |  |||| ||||||||||||||||||| |||||||||||||||    
T  10172570 atttatatataaattggagggtgcagtggcacctgggaggtctctgaagagat 10172518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 37022958 - 37023038
Alignment:
Q  62 aatgttatggataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37022958 aatgttatggataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccgcccctg 37023038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 4428885 - 4428956
Alignment:
Q  72 ataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctgc 143  Q
    ||||||||  |||||||||||   |||||||||||||||||||| ||||||||  ||||||||| |||||||    
T  4428885 ataatatgaaatttatataaaatctggggggtgcagtggcacctaggggtctccaaagagatccgcccctgc 4428956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 14028302 - 14028370
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccct 141  Q
    ||||||| ||||||||| ||   ||||||||||||| |||||||||||||||  ||||||||| |||||    
T  14028302 taatatgatatttatattaaaactggggggtgcagttgcacctgggggtctccaaagagatccgcccct 14028370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 28480720 - 28480763
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctg 116  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||    
T  28480720 taatatgatatttatataaaagttgggaggtgcagtggcacctg 28480763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 17549220 - 17549150
Alignment:
Q  72 ataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||||  |||||||||||   | |||||||||| ||||||||||||||||  ||||||||| ||||||    
T  17549220 ataatatgaaatttatataaaaacttgggggtgcagaggcacctgggggtctccaaagagatccgcccctg 17549150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 4617162 - 4617231
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||| |||||||||||| | | || |||||| || |||||| |||||||| |||||||||| |||||    
T  4617162 taatatgctatttatataaaagctcggaggtgcattgacacctgagggtctctaaagagatccatccctg 4617231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 37101823 - 37101888
Alignment:
Q  72 ataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccac 137  Q
    ||||||||  |||||||||||  || |||||||||||||||||||  ||||||  |||||||||||    
T  37101823 ataatatgaaatttatataaaaattagggggtgcagtggcacctgcaggtctccaaagagatccac 37101888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 20645867 - 20645911
Alignment:
Q  99 ggggtgcagtggcacctgggggtctctgaagagatccacccctgc 143  Q
    |||||||||||||||| |||||||||| ||||||| | |||||||    
T  20645867 ggggtgcagtggcaccagggggtctctaaagagattcgcccctgc 20645911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 31736925 - 31736969
Alignment:
Q  98 gggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    |||||||||||||||||||||||||||  ||||||| | ||||||    
T  31736925 gggggtgcagtggcacctgggggtctccaaagagattcgcccctg 31736969  T

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Target: scaffold1207 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 1267 - 1381
Alignment:
Q  196 ttgatccaaggtaagcttcagctatctcgcacatttccgcaaataccatggatgagatttcttcaacatcaaaatggttttcctcgtcattatagtta-- 293  Q
    ||||||||||| | ||||| ||| |||||| ||||| ||| |||||||||||||||||||||||| || ||||||| |||||||||||||||||||||      
T  1267 ttgatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaac 1366  T
Q  294 aacaatcatgggttt 308  Q
    |||||||||||||||    
T  1367 aacaatcatgggttt 1381  T

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Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 37045048 - 37044968
Alignment:
Q  62 aatgttatggataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  37045048 aatgttatggctaatatgctatttatataaatgttggggggtgcagtggcacctgggggtctatgaagagattcgcccctg 37044968  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 412423 - 412469
Alignment:
Q  57 gctggaatgttatggataatatgttatttatataaatgttggggggt 103  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||    
T  412423 gctgtaatgttatggctaatatgctatttatataaatgttggggggt 412469  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 19779880 - 19779918
Alignment:
Q  96 tggggggtgcagtggcacctgggggtctctgaagagatcc 135  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  19779880 tggggggtgcagtggcacct-ggggtctctgaagagatcc 19779918  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 39582062 - 39582099
Alignment:
Q  81 tatttatataaatgttggggggtgcagtggcacctggg 118  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  39582062 tatttatataaaggttggagggtgcagtggcacctggg 39582099  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 8541166 - 8541095
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctgcg 144  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  8541166 taatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctgcg 8541095  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 47278340 - 47278409
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctgc 143  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |||||||    
T  47278340 taatatgatatttatataaatattgggg-gtgcagtggcacctgggggtctctaaagagatccgcccctgc 47278409  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 27813556 - 27813512
Alignment:
Q  98 gggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||    
T  27813556 gggggtgcagtggcacctgggggtctctaaagagatccgcccctg 27813512  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 42641936 - 42641995
Alignment:
Q  82 atttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccct 141  Q
    |||||||||||   | |||||||||||||||||||||||||||  ||||||||| |||||    
T  42641936 atttatataaaacctcgggggtgcagtggcacctgggggtctccaaagagatccgcccct 42641995  T

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Target: scaffold0648 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 4581 - 4650
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  4581 taatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctg 4650  T

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Target: scaffold0274 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 4051 - 4120
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  4051 taatatgatatttatataaatgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctg 4120  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 16204810 - 16204740
Alignment:
Q  72 ataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  16204810 ataatatgatatttatataaacgttggggggtgcagtggcacctgggggtctctaaagagatccgcccctg 16204740  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 35187620 - 35187689
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| ||||||    
T  35187620 taatatgatatttatataaatgtcggggggtgcagtggcatctgggggtctctaaagagatccgcccctg 35187689  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 27993726 - 27993795
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||| |||||||||||| |||||||||||||||| ||| | ||||||||| ||||||||| ||||||    
T  27993726 taatatgatatttatataaaagttggggggtgcagtgacactttggggtctctaaagagatccgcccctg 27993795  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 8823595 - 8823662
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccc 140  Q
    ||||||| ||||||||| ||   ||||||||||||||||||||| |||||||| ||||||||| ||||    
T  8823595 taatatgatatttatatcaaaactggggggtgcagtggcacctgagggtctctaaagagatccgcccc 8823662  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 27400327 - 27400255
Alignment:
Q  62 aatgttatggataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatcc 135  Q
    |||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  27400327 aatgttatggctaatatgctatttatataaatgttggggg-tgcagtgacacctgggggtctctgaagagatcc 27400255  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 49017022 - 49017103
Alignment:
Q  62 aatgttatggataatatgttatttatataaatgttgggg-ggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    |||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  49017022 aatgttatggctaatatgctatttatataaatgctgggggggtgcagtggcacctgggggtctctaaagagatccgcccctg 49017103  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 11907738 - 11907820
Alignment:
Q  62 aatgttatggataatatgttatttatataaa--tgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    |||||||||| |||| || ||||||||||||  |||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  11907738 aatgttatggctaatgtgctatttatataaaaatgttggggggtgcagtggcacctgggagtctctgaagagatccgcccctg 11907820  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 44970151 - 44970071
Alignment:
Q  62 aatgttatggataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||| ||| ||||||||  ||||||||| |   ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  44970151 aatgtcatgcataatatgaaatttatatataaactggggggtgcagtggcacctgggagtctctgaagagatccgcccctg 44970071  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 1076070 - 1076140
Alignment:
Q  72 ataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||||  |||||||||||   ||||||||||||||||| |||||||||||  ||||||||| ||||||    
T  1076070 ataatatgaaatttatataaaaactggggggtgcagtggcatctgggggtctccaaagagatccgcccctg 1076140  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 23328711 - 23328649
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatcc 135  Q
    |||||||  |||| |||||| | || ||||||||||||||||||||||||||| |||||||||    
T  23328711 taatatgacatttgtataaaggctgaggggtgcagtggcacctgggggtctctaaagagatcc 23328649  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 49016941 - 49017003
Alignment:
Q  1 agggtgtcatgggattcaaactcgcgacatttacttgttttaaagaccacaaaaccgctggaa 63  Q
    |||||| |||||| ||||||| ||||||| ||||||| |||||||||||||  ||||||||||    
T  49016941 agggtgccatggggttcaaacacgcgacaattacttgctttaaagaccacatgaccgctggaa 49017003  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 15234913 - 15234983
Alignment:
Q  72 ataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||||  |||||||||||   | |||||||||| ||||||||||||||||  ||||||||| ||||||    
T  15234913 ataatatgaaatttatataaaaacttgggggtgcagaggcacctgggggtctccaaagagatccgcccctg 15234983  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 4038424 - 4038363
Alignment:
Q  81 tatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||||||||  |||| |||||||||||||| || ||||||||  |||||||| ||||||    
T  4038424 tatttatataaaatttggtgggtgcagtggcacatgtgggtctctacagagatccgcccctg 4038363  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 26942300 - 26942255
Alignment:
Q  96 tggggggtgcagtggcacctgggggtctctgaagagatccacccct 141  Q
    |||| ||||||||||||||||||||||||  |||||||| ||||||    
T  26942300 tgggaggtgcagtggcacctgggggtctccaaagagatctacccct 26942255  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 39947226 - 39947181
Alignment:
Q  98 gggggtgcagtggcacctgggggtctctgaagagatccacccctgc 143  Q
    |||||||||||||||||||  |||||| ||||||||||||| ||||    
T  39947226 gggggtgcagtggcacctgccggtctccgaagagatccacctctgc 39947181  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 44945048 - 44945004
Alignment:
Q  98 gggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||| |||||||||||||||||||  ||||||||| ||||||    
T  44945048 gggggtggagtggcacctgggggtctccaaagagatccgcccctg 44945004  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 46671519 - 46671588
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46671519 taatatgttatatatataaaatttggggggtgcagtggcacctgggggtctctgaagagatccgcccctg 46671588  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 43671426 - 43671487
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatcc 135  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  43671426 taatatgatatttatataaaggttgggg-gtgcagtggcacctgggggtctctaaagagatcc 43671487  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 25160641 - 25160710
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctgc 143  Q
    ||||||| |||||||||||| || |||| |||||||||||||| ||||||||| ||||||||| |||||||    
T  25160641 taatatgatatttatataaaagtcgggg-gtgcagtggcacctaggggtctctaaagagatccgcccctgc 25160710  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 16632295 - 16632360
Alignment:
Q  73 taatatgttatttatataaatgttgg----ggggtgcagtggcacctgggggtctctgaagagatc 134  Q
    ||||||| |||||||||||| |||||    ||||||||||||||||||||||||||| ||||||||    
T  16632295 taatatgatatttatataaaggttggagggggggtgcagtggcacctgggggtctctaaagagatc 16632360  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 36565777 - 36565847
Alignment:
Q  72 ataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||||  |||||||||||   |||||||||||||||||||||||| |||   ||||||||| ||||||    
T  36565777 ataatatgaaatttatataaaatctggggggtgcagtggcacctggggatcttcaaagagatccgcccctg 36565847  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 39864490 - 39864444
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggg 119  Q
    ||||||| |||||||||||| |||| ||||||||||||||| |||||    
T  39864490 taatatgatatttatataaaggttgaggggtgcagtggcacttgggg 39864444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 3712556 - 3712507
Alignment:
Q  94 gttggggggtgcagtggcacctgggggtctctgaagagatccacccctgc 143  Q
    ||||||||||||||||||||||| |||||||  | ||||||| |||||||    
T  3712556 gttggggggtgcagtggcacctgtgggtctccaaggagatccgcccctgc 3712507  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 43822901 - 43822970
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43822901 taatatgatatatatataaaatttggggggtgcagtggcacctgggggtctctgaagagatccgcccctg 43822970  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 7497098 - 7497030
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||    
T  7497098 taatatgatatttatataaatgttggggggtccagtggcacct-ggggtctctaaagagatccgcccctg 7497030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 13284269 - 13284331
Alignment:
Q  73 taatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatcc 135  Q
    ||||||| ||||||||| ||   ||| |||||||||||||||||||||||||  |||||||||    
T  13284269 taatatgatatttatatcaaaactggtgggtgcagtggcacctgggggtctccaaagagatcc 13284331  T

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Target: scaffold0006 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 230360 - 230290
Alignment:
Q  72 ataatatgttatttatataaatgttggggggtgcagtggcacctgggggtctctgaagagatccacccctgc 143  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |||||||    
T  230360 ataatatgctatttatataaatgttggggg-tgcagtgacacctgggggtctctaaagagatccgcccctgc 230290  T

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Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 230432 - 230395
Alignment:
Q  23 cgcgacatttacttgttttaaagaccacaaaaccgctg 60  Q
    |||||||||||||||||||||||||||||  |||||||    
T  230432 cgcgacatttacttgttttaaagaccacatgaccgctg 230395  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 181525 - 181481
Alignment:
Q  98 gggggtgcagtggcacctgggggtctctgaagagatccacccctg 142  Q
    ||||||||||||||| |||||||||||  ||||||||| ||||||    
T  181525 gggggtgcagtggcatctgggggtctccaaagagatccgcccctg 181481  T

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