View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_25 (Length: 389)
Name: NF12931_high_25
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 35041302 - 35040995
Alignment:
| Q |
8 |
aattgtattctaccacaattacatatttccctgttcatgcagaagaacaaactccttgtggtcataaatgctcagtaagaagtataaaaccaaatcaatg |
107 |
Q |
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| T |
35041302 |
aattgtattctacaacaattaaatattttcctgttcatgcagaagaacaaacaccttgtgggcataaatgctcaataagaaggataaaaccaaatcaatg |
35041203 |
T |
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| Q |
108 |
taatgatattcattcttgtctattataaaatgcgctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcat |
207 |
Q |
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| T |
35041202 |
ggatgatattcattcttgtctattataaaatgagctatgctaaatgttacgatagaattt-ccaatgaaatgcaagaataggtacgtgtcaacttttcat |
35041104 |
T |
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| Q |
208 |
aaagcctttaaactgtccagtatgtgtcgtgcatttattttcctttttaattacacttctaaatgaagagaaggaaattgttcactgaatcacaccccat |
307 |
Q |
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| T |
35041103 |
aaagcctttaaactgtccagtatgtgtcgtgcatttattttcctttttaattacacttgtaaatgaagaaaaggaaattgttcactgaatcacaccccat |
35041004 |
T |
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| Q |
308 |
acctacaaa |
316 |
Q |
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| T |
35041003 |
acctacaaa |
35040995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 35040969 - 35040911
Alignment:
| Q |
315 |
aaatgcaactttgtaggcaccaaagttttccaaggtcggtacaccaaagccacaaagtt |
373 |
Q |
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| T |
35040969 |
aaatgcaactttgtaggcaccaaagttttccaaggtcggtacaccaaagccacaaagtt |
35040911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 31178356 - 31178285
Alignment:
| Q |
141 |
gctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcc |
213 |
Q |
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| T |
31178356 |
gctatgctaaatgttacgatagaattt-ccaatgaaatgcaagaataggtacgtgtcaacttttcataaagcc |
31178285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 31178868 - 31178797
Alignment:
| Q |
141 |
gctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcc |
213 |
Q |
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| T |
31178868 |
gctatgctaaatgttacgatagaattt-ccaatgaaatgcaagaataggtacgtgtcaacttttcataaagcc |
31178797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 31179380 - 31179309
Alignment:
| Q |
141 |
gctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcc |
213 |
Q |
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| T |
31179380 |
gctatgctaaatgttacgatagaattt-ccaatgaaatgcaagaataggtacgtgtcaacttttcataaagcc |
31179309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 33854965 - 33854886
Alignment:
| Q |
141 |
gctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcctttaaac |
220 |
Q |
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| T |
33854965 |
gctatgctaaatgttacggtggaattttcctacaaaatgcaagaattgatatgtgtcaactttccatatagccttgaaac |
33854886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 52171406 - 52171499
Alignment:
| Q |
141 |
gctatgctaaatgttacgatagaatttgcctacgaaatgcaagaataggtacgtgtcaactttgcataaagcctttaaactgtccagtatgtgt |
234 |
Q |
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| T |
52171406 |
gctatgctaaatgttacgatggagtttgcatacgaaacgcaagaataggaccacgtcagctttccgtaaatccttgaaacagttcagtatgtgt |
52171499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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