View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_28 (Length: 351)
Name: NF12931_high_28
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 32483205 - 32482880
Alignment:
| Q |
17 |
aatagtacctgtatgaaaattacgagttaaaacaagagcatttgaaccatctctagggcgtttagaaatatctctttgtaaaggagaagaagataactgt |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32483205 |
aatagtacctgtatgaaaattacgagttgaaacaagagcatttgaaccatctctagggcgtttagaaatatctctttgtaatggagaagaagataactgt |
32483106 |
T |
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| Q |
117 |
tgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctcatgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32483105 |
tgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaaaccacgactcttacaacaagttctacatctcatgt |
32483006 |
T |
|
| Q |
217 |
gaggacaatctttcttagcttggttaccacaatcttgacaacttatcccttcagctgaagaagaagacctcatcgccatagtaaacgccgccgatctcga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32483005 |
gaggacaatctttcttagcttggttaccacaatcttgacaacttatcccttcagctgaagaagaagacctcatcgccatagtaaacgccgccgatctcga |
32482906 |
T |
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| Q |
317 |
cgacgattgatgttcatgatcatctg |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32482905 |
cgacgattgatgttcatgatcatctg |
32482880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 8102004 - 8101876
Alignment:
| Q |
134 |
tctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctcatgtgaggacaatctttctta |
233 |
Q |
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| T |
8102004 |
tctagcagcaggaacccaagtactcttaacatgagtttgacaatcaaaacctctactcttacaacaagttctacatctcatatgaggacaatctttctta |
8101905 |
T |
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| Q |
234 |
gcttggttaccacaatcttgacaacttat |
262 |
Q |
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||||| || |||||||||||||||||||| |
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| T |
8101904 |
gcttgattcccacaatcttgacaacttat |
8101876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 114 - 256
Target Start/End: Original strand, 7418510 - 7418652
Alignment:
| Q |
114 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctca |
213 |
Q |
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||||| || ||||| |||||| ||| ||| ||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| | |
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| T |
7418510 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
7418609 |
T |
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| Q |
214 |
tgtgaggacaatctttcttagcttggttaccacaatcttgaca |
256 |
Q |
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| T |
7418610 |
gatgtggacaatctttcttagcttggttaccacaatcttgaca |
7418652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 114 - 257
Target Start/End: Original strand, 52767556 - 52767699
Alignment:
| Q |
114 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctca |
213 |
Q |
| |
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|||||||| |||||||||||| ||| ||| ||||||||||| || |||||||| |||||||||||||| || ||||| |||||||||||||| ||||| | |
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| T |
52767556 |
tgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacactgaaaccctcgacttttacaacaagttctgcatctta |
52767655 |
T |
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| Q |
214 |
tgtgaggacaatctttcttagcttggttaccacaatcttgacaa |
257 |
Q |
| |
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|| |||||||||||| |||||||||||||| || |||||| |
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| T |
52767656 |
gatgtatacaatctttctttgcttggttaccacagtcctgacaa |
52767699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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