View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_33 (Length: 319)
Name: NF12931_high_33
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 44852971 - 44853272
Alignment:
| Q |
1 |
tcatctaagaaacaatgtgggtaacagaaaatacagaacaaaatacaaagaaaaatcatgtttgagcttaaagaaagagtgaaagagacgaaaatcagca |
100 |
Q |
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| T |
44852971 |
tcatctaagaaacaatgtgggtaacagaaaatacagaacaaaatacaaagaaaaatcatgtttgagcttaaagaaagagtgaaagagacgaaaatcagca |
44853070 |
T |
|
| Q |
101 |
agagtggaaggaataaccggtgtttctgcgaagatcggctgcagaaaagtcggagaaacggcggcggttgagagccacgcgctgccggagaaagcgagag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44853071 |
agagtggaaggaataaccggtgtttctgcgaagatcggctgaagaaaagtcggagaaacggcgacggttgagagccacgcgctgccggagaaagcgagag |
44853170 |
T |
|
| Q |
201 |
tgatgaaagaagtgagagtgaccaactgatgaaacgtgaaattcgggacgaaatgcaaaatggtgagaaaatgagactgtggttttatagcaggtggggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44853171 |
tgatgaaagaagtgagagtgaccaactgatgaaacgtgaaattcgggacgaaatgtaaaatggtgagaaaatgagactgtggttttatagcaggtggggt |
44853270 |
T |
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| Q |
301 |
tt |
302 |
Q |
| |
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|| |
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| T |
44853271 |
tt |
44853272 |
T |
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