View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_36 (Length: 300)
Name: NF12931_high_36
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 15250285 - 15250014
Alignment:
| Q |
11 |
cacagaatccaccaggtcccccaaacaacacaacacgttgcaaatcatcacgtaaattatcaacgtaatttgcatcataacaaagaggtttatcaaaata |
110 |
Q |
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| T |
15250285 |
cacagaatccaccaggtccaccaaacaacacaacacgttgcaaatcatcacgtaaattatcaacgtaatttgcatcataacaaagaggtttatcaaaata |
15250186 |
T |
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| Q |
111 |
cacatgaacttcatcggcatgtggggcacgatcatttctttgactatccttaatataaagatttgaaatataacatgaagttagaatatttgcaccagca |
210 |
Q |
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| T |
15250185 |
cacgtgaacttcatcggcatgtggggcacgatcatttctttgactatccttaatataaagatttgaaatataacatgaagttagaatatttgcaccagca |
15250086 |
T |
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| Q |
211 |
aactgtccagaacccattggaggactagggccatcaccaaaaatctgtgtttgacctgtccaaccaccttta |
282 |
Q |
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| T |
15250085 |
aactgtccagaacccattggaggactagggccatcaccaaaaatctgtgtttgacctgtccaaccaccttta |
15250014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 15231126 - 15231061
Alignment:
| Q |
216 |
tccagaacccattggaggactagggccatcaccaaaaatctgtgtttgacctgtccaaccaccttt |
281 |
Q |
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| T |
15231126 |
tccagaacccattggaggacttggaccatcaagaaaaaactgtgtatgaccagtccaaccagcttt |
15231061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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