View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_39 (Length: 285)
Name: NF12931_high_39
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 30493729 - 30493593
Alignment:
| Q |
111 |
tttaggttttatttttgttttctatgtgctatttggcttttcatttatatatcatgattcaatatttcaaataaacgtgggtctaatggaatatccctct |
210 |
Q |
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| T |
30493729 |
tttaggttttatttttgttttctatgtgctatttagcttttcatttacatatcatgattcaatatttcaaataaacgtgggtctaatggaatatccctct |
30493630 |
T |
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| Q |
211 |
tttcttatttgttatcagttcagtaaatatccctctt |
247 |
Q |
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| T |
30493629 |
tttcttatttgttatcagttcagtaaatatccctctt |
30493593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 111 - 247
Target Start/End: Complemental strand, 30534072 - 30533936
Alignment:
| Q |
111 |
tttaggttttatttttgttttctatgtgctatttggcttttcatttatatatcatgattcaatatttcaaataaacgtgggtctaatggaatatccctct |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30534072 |
tttaggttttatttttgttttctatgtgctatttagcttttcatttacatatcatgattcaatatttcaaataaacgtgggtctaatggaatatccctct |
30533973 |
T |
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| Q |
211 |
tttcttatttgttatcagttcagtaaatatccctctt |
247 |
Q |
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| T |
30533972 |
tttcttatttgttatcagttcagtaaatatccctctt |
30533936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 30494174 - 30494085
Alignment:
| Q |
18 |
acatatggcttttgcctatcataatttctaaactaattgaatttttgcaatgtgtgcctgttgagtatggttgaactttcgtgcatacga |
107 |
Q |
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| T |
30494174 |
acatatggcttttgcctaccataatttctaaactaattgaatttttgcaatgtgtgcctgttgagtatggttgaacttttgtgcatacga |
30494085 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 30534517 - 30534428
Alignment:
| Q |
18 |
acatatggcttttgcctatcataatttctaaactaattgaatttttgcaatgtgtgcctgttgagtatggttgaactttcgtgcatacga |
107 |
Q |
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| T |
30534517 |
acatatggcttttgcctaccataatttctaaactaattgaatttttgcaatgtgtgcctgttgagtatggttgaacttttgtgcatacga |
30534428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 30494405 - 30494360
Alignment:
| Q |
134 |
atgtgctatttggcttttcatttatatatcatgattcaatatttca |
179 |
Q |
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| T |
30494405 |
atgttctatttaacttttcatttatatatcgtgattcaatatttca |
30494360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 30534748 - 30534703
Alignment:
| Q |
134 |
atgtgctatttggcttttcatttatatatcatgattcaatatttca |
179 |
Q |
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|||| |||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
30534748 |
atgttctatttaacttttcatttatatatcgtgattcaatatttca |
30534703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 41620041 - 41620105
Alignment:
| Q |
28 |
tttgcctatcataatttctaaactaattgaatttttgcaatgtgtgcctgttgagtatggttgaa |
92 |
Q |
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| T |
41620041 |
tttgcctaccatcatttctaaactaattgaatttttgcaatgtgtgcctgttgagcatggttgaa |
41620105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 41620376 - 41620449
Alignment:
| Q |
123 |
ttttgttttctatgtgctatttggcttttcatttatatatcatgattcaatatttcaaataaacgtgggtctaatg |
198 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||| |||||||||||| | || ||||| |||||||| |
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| T |
41620376 |
ttttgttttccatgtgctatttgg--tttcatttatatatcaggattcaatattttagatggacgtgagtctaatg |
41620449 |
T |
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