View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_40 (Length: 260)
Name: NF12931_high_40
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 53578536 - 53578778
Alignment:
| Q |
1 |
aagataacgcaacaaagtgggcaagacctcatggtgtcaagggattttcaggtccaatccaatccataattccacgtgaagctagaagaaagtccaaaga |
100 |
Q |
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| T |
53578536 |
aagataacgcaacaaagtgggcaagacctcacggtgtcaagggattttcaggtccaatccaatccataattccacgtgaagctagaagaaagtccaaaga |
53578635 |
T |
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| Q |
101 |
tattaatggaattgattatgaagaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaagaaacaaatnnnnnnnttgaaagacatg |
200 |
Q |
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| T |
53578636 |
tattaatggaattgattatgaagaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaagaaacaaataaaaaaatcgaaagacatg |
53578735 |
T |
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| Q |
201 |
gaagtgaagaaacatgtaaacacttttcaaaagatgttgtttc |
243 |
Q |
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| T |
53578736 |
gaagtgaagaaacatgtaaacacttttcaaaagatgttgtttc |
53578778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 15524884 - 15524935
Alignment:
| Q |
123 |
gaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaaga |
174 |
Q |
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| T |
15524884 |
gaacccacttcaccaaaaatatcgtgcatgggagagatcaagcttaagaaga |
15524935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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