View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_41 (Length: 260)
Name: NF12931_high_41
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 13893617 - 13893389
Alignment:
| Q |
1 |
cctaatcatttcaacatttattatcaattcacttcaaactaaacttaaaacattcatgaatttcttcttcacaacatctatgaaggttaactttcaatct |
100 |
Q |
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| T |
13893617 |
cctaatcatatcaacatttattatcaattcacttctaactaaacttaaaacattcatgaatttcttcttcacaacatctatgaaggttaactttcaatct |
13893518 |
T |
|
| Q |
101 |
atgcttcatgaaaagtgtcaaagaaagtttagaaccaacatggtgattctcaacaatcttaacatggtaacgatttcaatctatgcttcatgtaaagtgt |
200 |
Q |
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| T |
13893517 |
atgcttcacgaaaagtgtcaaagaaagtttagaaccaacagggtgatt---------------atggtaacgatttcaatctatgcttcatgtaaagtgt |
13893433 |
T |
|
| Q |
201 |
caaagaaagcttagaaccaacagggtgattctcaacaatcttaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13893432 |
caaagaaagcttagaaccaacagggtgattctcaacaatcttaa |
13893389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 13889059 - 13888898
Alignment:
| Q |
12 |
caacatttattatcaattcacttcaaactaaacttaaaacattcatgaatttcttcttcacaacatctatgaaggttaactttcaatctatgcttcatga |
111 |
Q |
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| T |
13889059 |
caacatttaatatcaattcacttctaactaatcttcaagtatttatgaatttcttcatcacaacgcctatgaagattaacttttaatccatgtttcatgt |
13888960 |
T |
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| Q |
112 |
aaagtgtcaaagaaagtttagaaccaacatggtgattctcaacaatcttaacatggtaacga |
173 |
Q |
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| T |
13888959 |
aaagtgtcaaagaaagcttaggaacaataaggtgattctcaacaaccttaacatggtaacga |
13888898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 13891977 - 13891807
Alignment:
| Q |
3 |
taatcatttcaacatttattatcaattcacttcaaactaaacttaaaacattcatgaatttcttcttcacaacatctatgaaggttaactttcaatctat |
102 |
Q |
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| T |
13891977 |
taatcataccaatatttattatcaattcacttctaactaatgtttaagtatttatgaattttttcatcacaacgtcgatgaagattaactttcaatccat |
13891878 |
T |
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| Q |
103 |
gcttcatgaaaagtgtcaaagaaagtttagaaccaacatggtgattctcaacaatcttaacatggtaacga |
173 |
Q |
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| T |
13891877 |
gtttcatgtaaagtgtcaaagaaagcttaggaacaacagggtgcttctcaacaaccttaacatggtaacga |
13891807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 13895636 - 13895802
Alignment:
| Q |
3 |
taatcatttcaacatttattatcaattcacttcaaactaaacttaaaacattcatgaatttcttcttcacaacatctatgaaggttaactttcaatctat |
102 |
Q |
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||||||| ||||||| ||| ||||||||| || |||| | ||| ||| ||| |||||||||||| ||||||| ||||||||||||||||| |||| || |
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| T |
13895636 |
taatcatagcaacattcattctcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaatccat |
13895735 |
T |
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| Q |
103 |
gcttcatgaaaagtgtcaaagaaagtttagaaccaacatggtgattctcaacaatcttaacatggta |
169 |
Q |
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| T |
13895736 |
gcttcatgtaaagtgtcaaagcaagcttaggaacaacaaggtgattttcaacaaccttaatatggta |
13895802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 13893459 - 13893378
Alignment:
| Q |
92 |
tttcaatctatgcttcatgaaaagtgtcaaagaaagtttagaaccaacatggtgattctcaacaatcttaacatggtaacga |
173 |
Q |
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| T |
13893459 |
tttcaatctatgcttcatgtaaagtgtcaaagaaagcttagaaccaacagggtgattctcaacaatcttaacacggtaacga |
13893378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 13890466 - 13890629
Alignment:
| Q |
3 |
taatcatttcaacatttattatcaattcacttcaaactaaacttaaaacattcatgaatttcttcttcacaacatctatgaaggttaactttcaatctat |
102 |
Q |
| |
|
||||||| ||| ||||||| |||||| || || |||| ||||| ||| ||| |||| ||||||| ||||||| ||||||||||||||||| |||| || |
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| T |
13890466 |
taatcatcacaatatttattctcaattaacatctaacttaacttcaaatatttatgagtttcttcatcacaacgcctatgaaggttaacttttaatccat |
13890565 |
T |
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| Q |
103 |
gcttcatgaaaagtgtcaaagaaagtttagaaccaacatggtgattctcaacaatcttaacatg |
166 |
Q |
| |
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| T |
13890566 |
actttatgtaaaatgtcaaagtaagcttaggaacaacaaggtgattttcaacaaccttaacatg |
13890629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 13891888 - 13891818
Alignment:
| Q |
174 |
tttcaatctatgcttcatgtaaagtgtcaaagaaagcttagaaccaacagggtgattctcaacaatcttaa |
244 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||| |
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| T |
13891888 |
tttcaatccatgtttcatgtaaagtgtcaaagaaagcttaggaacaacagggtgcttctcaacaaccttaa |
13891818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 13895729 - 13895796
Alignment:
| Q |
178 |
aatctatgcttcatgtaaagtgtcaaagaaagcttagaaccaacagggtgattctcaacaatcttaat |
245 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||| | ||||| ||||||| ||||||| |||||| |
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| T |
13895729 |
aatccatgcttcatgtaaagtgtcaaagcaagcttaggaacaacaaggtgattttcaacaaccttaat |
13895796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 13888975 - 13888909
Alignment:
| Q |
178 |
aatctatgcttcatgtaaagtgtcaaagaaagcttagaaccaacagggtgattctcaacaatcttaa |
244 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||| | ||| | ||||||||||||||| ||||| |
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| T |
13888975 |
aatccatgtttcatgtaaagtgtcaaagaaagcttaggaacaataaggtgattctcaacaaccttaa |
13888909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 1033628 - 1033796
Alignment:
| Q |
3 |
taatcatttcaacatttattatcaattcacttcaaactaaacttaaaacattcatgaatttcttcttcacaacatctatgaaggttaactttcaatctat |
102 |
Q |
| |
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||||||| ||| ||||||| ||||||||| || |||| | ||| ||| ||| |||||||||||| ||||||| ||||||||||||||||| |||| || |
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| T |
1033628 |
taatcatagcaatatttattctcaattcacatctaacttaccttcaaatatttatgaatttcttcatcacaacgcctatgaaggttaacttttaatccat |
1033727 |
T |
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| Q |
103 |
gcttcatgaaaagtgtcaaagaaagtttagaaccaacatggtgattctcaacaatcttaacatggtaac |
171 |
Q |
| |
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|||||||| ||||||||||||| || |||| | ||| | ||||||||||||||| |||||||||||||| |
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| T |
1033728 |
gcttcatgtaaagtgtcaaagatagcttaggaacaatagggtgattctcaacaaccttaacatggtaac |
1033796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 1033721 - 1033787
Alignment:
| Q |
178 |
aatctatgcttcatgtaaagtgtcaaagaaagcttagaaccaacagggtgattctcaacaatcttaa |
244 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||| ||||| |
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| T |
1033721 |
aatccatgcttcatgtaaagtgtcaaagatagcttaggaacaatagggtgattctcaacaaccttaa |
1033787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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