View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_43 (Length: 250)
Name: NF12931_high_43
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 10566698 - 10566484
Alignment:
| Q |
19 |
tagttgtgattgaaattttgaaactttaggttgaatggaaggagttaaaacacaagtgtggtgtatggtggtcgtagttgatgataaaagttacccaact |
118 |
Q |
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| T |
10566698 |
tagttgtgattgaaattttgaaactttgggttgaatggaaggagttaaaacacaagtgtggtgtatggtggttgtagttgatgataaaagttacccaact |
10566599 |
T |
|
| Q |
119 |
gaatgttaatgcttccatagaaacaaataaaaatcaaaatataaactgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagacaaat |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10566598 |
gaatgttaatgcttctatagaaacaaataaaaatcaaaatataatttgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagacaaat |
10566499 |
T |
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| Q |
219 |
gaggagtcaatctca |
233 |
Q |
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||||||||||||||| |
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| T |
10566498 |
gaggagtcaatctca |
10566484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 45521145 - 45520929
Alignment:
| Q |
19 |
tagttgtgattgaaattttgaaactttaggttgaatggaaggagttaaaacacaagtgtggtgtatggtggtcgtagttgatgataaaagttacccaact |
118 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
45521145 |
tagttgtgattgaaattttgaaactttgggttgaatgaaaggagttaaaacacaagtgtggtgtatggtggttgtagttgatgataaaagttacccaatt |
45521046 |
T |
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| Q |
119 |
gaatgttaatgcttccatagaaacaaataaaaatcaaaatataaac--tgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagacaa |
216 |
Q |
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| T |
45521045 |
gaatgttaatgcttccatagaaacagataaaaatcaaaatataaacagtgacacataaatgaaagcctcacgcatgttaattacgtaaagggtgagacaa |
45520946 |
T |
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| Q |
217 |
atgaggagtcaatctca |
233 |
Q |
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||||||||||||||||| |
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| T |
45520945 |
atgaggagtcaatctca |
45520929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 52728069 - 52728266
Alignment:
| Q |
19 |
tagttgtgattgaaattttgaaactttaggttgaatggaaggagttaaaacacaagtgtggtgt-atggtggtcgtagttgatgataaaagttacccaac |
117 |
Q |
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|||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||||||| ||| |||||| | ||| ||| ||||| |
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| T |
52728069 |
tagttgtgattgaaattttgaagcttgggggtgaatggaaggagttaaaacacaagtgtggtgtgatggtggttgtatttgatgttgaaaatta-ccaac |
52728167 |
T |
|
| Q |
118 |
tgaatgttaatgcttccatagaaacaaataaaaatcaaaatataaac--tgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagaca |
215 |
Q |
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|||||| | ||||| |||||||||||||||||||||||||||| || ||| | |||||||||||||| ||||||||||||||||| || |||||| |
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| T |
52728168 |
agaatgtaagtgctttcatagaaacaaataaaaatcaaaatatacacagtgagaaagaaatgaaagtctca--catgttaattacataaaaggagagaca |
52728265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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