View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12931_high_45 (Length: 249)
Name: NF12931_high_45
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 52805156 - 52805394
Alignment:
| Q |
1 |
cttccatgcttgcaatggaatcaaagaccggctttgttgtttcccttttatcattgaaattgaactcaatggtgctgcatgattgttggcgacggaatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52805156 |
cttccatgcttgcaatggaatcaaagaccggctttgttgtttcccttttatcattgaaattgaactcaatggtgctgcatgattgttggcgacggaatcg |
52805255 |
T |
|
| Q |
101 |
aggtgtaagattggaggtgtgagatatgatgcttgatgaattattgagatttgaactgtgattattgttgctcctattccagtggttttggtgctgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52805256 |
aggtgtaagattggaggtgtgagatatgatgcttgatgaattattgaggtttgaactgtgattattgttgctcctattccagtggttttggtgctgtttg |
52805355 |
T |
|
| Q |
201 |
ttttggtgtagacagtggcatagtctattccattttctt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52805356 |
ttttggtgtagacagtggcatagtctattccattttctt |
52805394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University