View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_46 (Length: 249)
Name: NF12931_high_46
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_46 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 36232073 - 36232308
Alignment:
| Q |
14 |
aatagcttattaaaaacatacaaattacaatgacttaattaaaaaacttttaacgaagatagagttacttgaaatttaaaatattgtcagagtcaggact |
113 |
Q |
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| T |
36232073 |
aatagcttattaaaaacatacaaattacaatgatctaattgaaaaacttttaataaagatagagttatttgaaatttaaaatattatcagaatcatgact |
36232172 |
T |
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| Q |
114 |
aatttgaaagtggttaaagagaccaagatcaatttaacagtttactcatctttctcgatgcaataaagtaacaaagctgtttgatgagctgcctccaact |
213 |
Q |
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||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36232173 |
aatttaaaagtggttacaaagaccaagatcaatttagcagtttactcatctttctcgatgaaataaagtaacaaagctgtttgatgagctgcctccaact |
36232272 |
T |
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| Q |
214 |
catgtttttctgtaaaatatagttaaataatactac |
249 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36232273 |
catgtttttctgtaaaatatagttaaataatactac |
36232308 |
T |
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