View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12931_high_49 (Length: 245)
Name: NF12931_high_49
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 143 - 242
Target Start/End: Complemental strand, 43611190 - 43611091
Alignment:
| Q |
143 |
gtgtctgcagtaaaaggtagtaactagtaacgtaacgctattatgctaatctatccgtatatgcataaacagaagcctctccattttatcacaatttcag |
242 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43611190 |
gtgtgtgcagtaaaaggtagtaactagtaacgtaacgctattatgctaatctatccgtatatgcataaacagaagcctctccattttatcacaatttcag |
43611091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 43611316 - 43611234
Alignment:
| Q |
17 |
cagatgaacattttatgcagttgatagataggttaactaccatacagaagtgaaaatggaaatttgttattgacaatgtattt |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43611316 |
cagatgaacattttatgcagttgatatataggttaactactatacagaagtgaaaatggaaatttgttattgacaatgtattt |
43611234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University