View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12931_high_5 (Length: 684)

Name: NF12931_high_5
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12931_high_5
NF12931_high_5
[»] chr1 (10 HSPs)
chr1 (131-666)||(16101322-16101860)
chr1 (209-666)||(14654847-14655306)
chr1 (544-666)||(16104778-16104900)
chr1 (545-678)||(19656889-19657022)
chr1 (545-666)||(14650847-14650969)
chr1 (545-666)||(14660638-14660760)
chr1 (545-666)||(17478215-17478336)
chr1 (545-659)||(29287704-29287817)
chr1 (545-613)||(17652807-17652875)
chr1 (545-616)||(47050059-47050130)
[»] chr5 (6 HSPs)
chr5 (223-666)||(5518656-5519096)
chr5 (18-385)||(38979104-38979459)
chr5 (394-508)||(38978534-38978649)
chr5 (545-653)||(42786077-42786185)
chr5 (544-666)||(27197779-27197902)
chr5 (547-665)||(15599416-15599535)
[»] chr3 (8 HSPs)
chr3 (18-245)||(7685246-7685474)
chr3 (530-661)||(7688409-7688541)
chr3 (545-666)||(5705065-5705186)
chr3 (545-666)||(28104392-28104514)
chr3 (545-666)||(28058009-28058131)
chr3 (545-666)||(28068434-28068556)
chr3 (545-651)||(19435605-19435710)
chr3 (567-615)||(17954288-17954336)
[»] scaffold0016 (1 HSPs)
scaffold0016 (230-562)||(76660-76992)
[»] chr2 (8 HSPs)
chr2 (545-666)||(10416520-10416641)
chr2 (545-678)||(4698464-4698597)
chr2 (458-557)||(9310540-9310639)
chr2 (544-653)||(808176-808285)
chr2 (545-651)||(2588428-2588533)
chr2 (224-462)||(9305879-9306115)
chr2 (545-613)||(44324742-44324810)
chr2 (567-615)||(45333308-45333356)
[»] chr6 (13 HSPs)
chr6 (402-557)||(27684718-27684874)
chr6 (544-666)||(33063689-33063811)
chr6 (557-667)||(30130915-30131025)
chr6 (545-666)||(27527824-27527946)
chr6 (545-679)||(33056197-33056334)
chr6 (554-659)||(15969961-15970066)
chr6 (545-650)||(28041304-28041408)
chr6 (545-613)||(22014634-22014702)
chr6 (548-665)||(6952786-6952903)
chr6 (542-616)||(25477662-25477735)
chr6 (440-491)||(16692837-16692888)
chr6 (567-615)||(14011684-14011732)
chr6 (229-261)||(31394015-31394047)
[»] chr7 (3 HSPs)
chr7 (543-666)||(28804133-28804256)
chr7 (535-666)||(26525371-26525503)
chr7 (567-615)||(36263730-36263778)
[»] chr4 (5 HSPs)
chr4 (543-662)||(5358101-5358221)
chr4 (548-665)||(30873893-30874010)
chr4 (545-651)||(27560628-27560733)
chr4 (545-639)||(51534234-51534327)
chr4 (545-639)||(18693730-18693823)
[»] chr8 (4 HSPs)
chr8 (544-666)||(28602613-28602735)
chr8 (545-655)||(15925525-15925635)
chr8 (545-653)||(4706151-4706259)
chr8 (567-615)||(18983071-18983119)
[»] scaffold0713 (1 HSPs)
scaffold0713 (567-666)||(1289-1388)
[»] scaffold0002 (4 HSPs)
scaffold0002 (544-637)||(10306-10399)
scaffold0002 (547-666)||(406455-406574)
scaffold0002 (622-666)||(412530-412574)
scaffold0002 (547-666)||(423827-423945)
[»] scaffold0014 (1 HSPs)
scaffold0014 (544-666)||(115262-115384)
[»] scaffold0012 (1 HSPs)
scaffold0012 (545-665)||(233054-233174)
[»] scaffold0654 (2 HSPs)
scaffold0654 (544-664)||(3957-4077)
scaffold0654 (544-664)||(5309-5431)
[»] scaffold0406 (1 HSPs)
scaffold0406 (544-645)||(4129-4228)
[»] scaffold0007 (1 HSPs)
scaffold0007 (567-613)||(61210-61256)


Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 131 - 666
Target Start/End: Complemental strand, 16101860 - 16101322
Alignment:
Q  131 gcaaaatttgccttcctctaagaacctcaacattaactactcttaca--accaactacgttcgtcaacatgaacgccataagtacagaccaaaccacgac 228  Q
    |||||||| |||||||| ||  |||||||||| |||||||| |||||  | | || |||| | |||||||||||||||||||||| ||||||||||| ||    
T  16101860 gcaaaattcgccttcctatagaaacctcaacactaactacttttacataagctac-acgtccatcaacatgaacgccataagtacggaccaaaccacaac 16101762  T
Q  229 ctctttgactagggtcttaaggttggg-cagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccgaatga 327  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||| ||||||||||    
T  16101761 ctctttgactagggccttaaggtttggacagtaaacccataaggaattatcttcccc-ctagtggtgatcataaaattgggtgacatcctcaccgaatga 16101663  T
Q  328 aagaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactaccatag 427  Q
    |||||||||||  |||| |||||| ||||| |||||||||| |||| ||||||||||||| | | |||| ||||| ||||||||||||||||||||||||    
T  16101662 aagaaaattgaccaaaattaggacaagacaacaaacaaagtaagaccaatcaaagaccaaaagaaataacaagattggacaacaaatgacactaccatag 16101563  T
Q  428 aatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaacc 527  Q
     ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16101562 gatgcaaatagatttttgcaagtaaatggtgccgcagttcacaatttactaacaagaatctattttcattctatgtctgcagctagtaggacctacaacc 16101463  T
Q  528 -gagctctgataccaac-ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttga 625  Q
     |||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||    
T  16101462 agagctctgataccaactttgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttga 16101363  T
Q  626 caaactataatttaaacaattttcaaattgactttcactta 666  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  16101362 caaactataatttaaacaattttcaagttgactttcactta 16101322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 209 - 666
Target Start/End: Complemental strand, 14655306 - 14654847
Alignment:
Q  209 agtacagaccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattggg 308  Q
    ||||| |||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| || ||  ||| |||||||||||||| |||||||||||    
T  14655306 agtacggaccgaaacacgaactctttgactaaggtcttaaggttgggcagtaaacccataagaaactaatttcccttctagtggtgataatagaattggg 14655207  T
Q  309 tgacatccacaccgaatgaaagaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggaca 408  Q
    ||||| || || ||||||||||||||||||  ||||||||||||||||| |||||||| | | |||| ||||||||||| | | |||||||||| |||||    
T  14655206 tgacaccctcatcgaatgaaagaaaattgaccaaaaataggacgagacaacaaacaaaataaaacaattcaaagaccaaaagagataataagattggaca 14655107  T
Q  409 acaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgca 508  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14655106 acaaatgacactaccatagaatccaaatagatttttgcaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcgttctatgtctgca 14655007  T
Q  509 gctattaggacctacaaccgagctctgataccaac-ttgtcacgaccc-aaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaa 606  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  14655006 gctattaggacctacaaccgagctctgataccaactttgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaa 14654907  T
Q  607 gcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcactta 666  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  14654906 gcctaatgacaacacttgacaaactataatttaaataattttcaaattgactttcactta 14654847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 544 - 666
Target Start/End: Complemental strand, 16104900 - 16104778
Alignment:
Q  544 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16104900 ttgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttgacaaactataatttaaaca 16104801  T
Q  644 attttcaaattgactttcactta 666  Q
    |||||||||||||||||||||||    
T  16104800 attttcaaattgactttcactta 16104778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 545 - 678
Target Start/End: Original strand, 19656889 - 19657022
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19656889 tgtcacgacccaagattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacaatccttgacaaactataatttaaacaa 19656988  T
Q  645 ttttcaaattgactttcacttatgatgatgtcca 678  Q
    |||||||||| |||||||||||| ||||| ||||    
T  19656989 ttttcaaatttactttcacttataatgatatcca 19657022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 545 - 666
Target Start/End: Complemental strand, 14650969 - 14650847
Alignment:
Q  545 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  14650969 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14650870  T
Q  644 attttcaaattgactttcactta 666  Q
    |||||||||||||||||||||||    
T  14650869 attttcaaattgactttcactta 14650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 545 - 666
Target Start/End: Complemental strand, 14660760 - 14660638
Alignment:
Q  545 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  14660760 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14660661  T
Q  644 attttcaaattgactttcactta 666  Q
    |||||||||||||||||||||||    
T  14660660 attttcaaattgactttcactta 14660638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 545 - 666
Target Start/End: Original strand, 17478215 - 17478336
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||     
T  17478215 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagccaattgacaacacttgacaaactataattcaaacat 17478314  T
Q  645 ttttcaaattgactttcactta 666  Q
    ||| ||||||||||||||||||    
T  17478315 tttccaaattgactttcactta 17478336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 545 - 659
Target Start/End: Original strand, 29287704 - 29287817
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||    
T  29287704 tgtcacgacccaaaattcacgatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgac-aactataatttaaacaa 29287802  T
Q  645 ttttcaaattgactt 659  Q
    ||||||| |||||||    
T  29287803 ttttcaatttgactt 29287817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 613
Target Start/End: Original strand, 17652807 - 17652875
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 613  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  17652807 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 17652875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 616
Target Start/End: Original strand, 47050059 - 47050130
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 616  Q
    |||||||||||||||||||    |||||| ||| ||| ||||||| |||||||||||| ||||| |||||||    
T  47050059 tgtcacgacccaaaattcacaaccgtgactggcgcacaaactagaacatcctagtccgacaagcatattgac 47050130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 223 - 666
Target Start/End: Original strand, 5518656 - 5519096
Alignment:
Q  223 cacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccg 322  Q
    |||||||||||| |||| ||| ||| ||||||||     |||||||||||||||  ||| |||||||||||||||||||||||||   |||||   || |    
T  5518656 cacgacctctttaactaaggttttacggttgggcg----acccataaggaattaatttcccttctagtggtgatcatagaattggagaacatcattactg 5518751  T
Q  323 aatgaaagaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactac 422  Q
    |||||||||||| |||  ||| ||| ||||||||  ||||||||||||||||| ||||||||||| | | |||||||||| ||||||||||| |||||||    
T  5518752 aatgaaagaaaactgaccaaatataagacgagacgacaaacaaagtgagacaattcaaagaccaaaagaaataataagattggacaacaaataacactac 5518851  T
Q  423 catagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggaccta 522  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  5518852 catagaatgcaaatagattcttgcaagtaaatggtgccgcggttcacaatttactagcaagaatctattttaattctatgtctgcagttattaggaccta 5518951  T
Q  523 caaccgagctctgataccaac-ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaaccc 621  Q
    |||||| |||||||||||||| ||||||||||||||||||||   ||||||||||| ||||||||||| |||| ||||||||||||||||||||| || |    
T  5518952 caaccgggctctgataccaactttgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcatagtccggcaagcctattgacgacac 5519051  T
Q  622 ttgacaaactataatttaaacaattttcaaattgactttcactta 666  Q
    || |||||||||||||||||||||||| |||| ||  ||||||||    
T  5519052 ttaacaaactataatttaaacaatttttaaatcgaaattcactta 5519096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 38979459 - 38979104
Alignment:
Q  18 actgctcaccctaactaactccttgttgaccgccaaaatttgtttgtcttagattatcatgttgcttcccaacaataannnnnnnaaaataaataattgt 117  Q
    ||||||||||||||||| |||||||||||||| | | |||||||||||| ||||||||||||||||||||||||| ||            ||  | ||||    
T  38979459 actgctcaccctaacta-ctccttgttgaccgtccagatttgtttgtct-agattatcatgttgcttcccaacaaaaaccccc-------aacaagttgt 38979369  T
Q  118 tggaaaactagtagcaaaatttgccttcctctaagaacctcaacattaactactcttacaaccaa-ctacgttcgtcaacatgaacgccataagtacaga 216  Q
    || |||||   | |||||||| ||||||||||| |||| | |||| ||||||||  ||||| ||| |||||| |||||||||||||| ||||||| ||||    
T  38979368 tgcaaaacccatggcaaaattcgccttcctctaggaacattaacagtaactactactacaaacaagctacgtccgtcaacatgaacgacataagtgcaga 38979269  T
Q  217 ccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || |||||||||||||| |    
T  38979268 ccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccattaggaattatcttcccttctagtggtgataattgaattgggtgacatac 38979169  T
Q  317 acaccgaatgaaagaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagacc 385  Q
     |||||||||||||||||||||  |||||||| |||||||    ||||||||||||||| |||||||||    
T  38979168 tcaccgaatgaaagaaaattgaccaaaaatagaacgagac----aacaaagtgagacaattcaaagacc 38979104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 394 - 508
Target Start/End: Complemental strand, 38978649 - 38978534
Alignment:
Q  394 taataagatcggacaacaaatgacactaccatagaatgcaaatagattttt-gaaagtaaatggtgccgcggttcacaatttactagcaagaatctattt 492  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||    
T  38978649 taataagattgaacaacaaatgacactaccatagaatgcaagtagattttttgcaagtaaatggtgccgcggctcacaatttactagcaagaatctattt 38978550  T
Q  493 tcattctatgtctgca 508  Q
    ||| ||| ||||||||    
T  38978549 tcactctgtgtctgca 38978534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 545 - 653
Target Start/End: Complemental strand, 42786185 - 42786077
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    ||||||||||||||||| |   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  42786185 tgtcacgacccaaaatttataatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaacaa 42786086  T
Q  645 ttttcaaat 653  Q
    |||| ||||    
T  42786085 tttttaaat 42786077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 544 - 666
Target Start/End: Original strand, 27197779 - 27197902
Alignment:
Q  544 ttgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 642  Q
    |||||||||||||||| ||||   |||||| |||| ||||||||||| ||||||||| ||||||| ||| ||||||| |||||||||||||||| ||||     
T  27197779 ttgtcacgacccaaaaattcacaatcgtgatcggcgcacgaactagaacatcctagttcggcaagtctaatgacaacacttgacaaactataatataaat 27197878  T
Q  643 aattttcaaattgactttcactta 666  Q
    |||||| |||||||||||||||||    
T  27197879 aatttttaaattgactttcactta 27197902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 665
Target Start/End: Complemental strand, 15599535 - 15599416
Alignment:
Q  547 tcacgacccaaaat-tcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaat 645  Q
    |||||||||||||  ||||  ||||||| | | ||||||||||| ||||||||| |||||||||||||||| || |||||||  | | |||||| || ||    
T  15599535 tcacgacccaaaaactcaaaatcgtgacggacgcacgaactagaacatcctagttcggcaagcctattgacgacacttgacacgcaaaaatttagactat 15599436  T
Q  646 tttcaaattgactttcactt 665  Q
    || ||| |||| ||||||||    
T  15599435 ttccaatttgaatttcactt 15599416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 9e-78; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 7685474 - 7685246
Alignment:
Q  18 actgctcaccctaactaactccttgttgaccgccaaaatttgtttgtcttagattatcatgttgcttcccaacaataannnnnnnaaaataaataattgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||    
T  7685474 actgctcaccctaactaactccttgttgaccgccaaaatttgtttgtcttagattatcatgttgcttcccaacaacaacccccccaaaataaataattgt 7685375  T
Q  118 tggaaaactagtagcaaaatttgccttcctctaagaacctcaacattaactactcttacaaccaa-ctacgttcgtcaacatgaacgccataagtacaga 216  Q
    ||  |||  ||| |||||||| ||||||| ||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||| ||    
T  7685374 tgctaaaacagtggcaaaattcgccttccgctaggaacctcaacattaactgctcttacaaccaagctacgtccgtcaacatgaacaccataagtaccga 7685275  T
Q  217 ccaaaccacgacctctttgactagggtct 245  Q
    |||||||||||||||||||||||||||||    
T  7685274 ccaaaccacgacctctttgactagggtct 7685246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 530 - 661
Target Start/End: Original strand, 7688409 - 7688541
Alignment:
Q  530 gctctgataccaactt-gtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaa 628  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7688409 gctctgataccaactttgtcacgacctaaaattcaatttcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacccttgacaa 7688508  T
Q  629 actataatttaaacaattttcaaattgactttc 661  Q
    |||||||||||||||||||||||||||||||||    
T  7688509 actataatttaaacaattttcaaattgactttc 7688541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 545 - 666
Target Start/End: Original strand, 5705065 - 5705186
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    ||||||||||||||||||||| ||||||||||| | |||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5705065 tgtcacgacccaaaattcaatatcgtgaccggcgctcgaactaagacatcctagtccggcaagcctattgacgacccttgacaaactataatttaaacaa 5705164  T
Q  645 ttttcaaattgactttcactta 666  Q
    |||||||| |||||||||||||    
T  5705165 ttttcaaactgactttcactta 5705186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 545 - 666
Target Start/End: Complemental strand, 28104514 - 28104392
Alignment:
Q  545 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||| ||||  |||||||||||| || |||||||| ||||||||||||||||||||| |||| || ||||||||||||||||||| | |    
T  28104514 tgtcacgacccaaaaattcacattcgtgaccggcgcatgaactagaacatcctagtccggcaagcctaatgacgacacttgacaaactataatttagata 28104415  T
Q  644 attttcaaattgactttcactta 666  Q
    | |||||||||||||||||||||    
T  28104414 aatttcaaattgactttcactta 28104392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 545 - 666
Target Start/End: Original strand, 28058009 - 28058131
Alignment:
Q  545 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| ||||||||||||||||||||| | |||||  |||||||||||||||||| | |    
T  28058009 tgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 28058108  T
Q  644 attttcaaattgactttcactta 666  Q
    | ||||||||| |||||||||||    
T  28058109 aatttcaaatttactttcactta 28058131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 545 - 666
Target Start/End: Original strand, 28068434 - 28068556
Alignment:
Q  545 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| ||||||||||||||||||||| | |||||  |||||||||||||||||| | |    
T  28068434 tgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 28068533  T
Q  644 attttcaaattgactttcactta 666  Q
    | ||||||||| |||||||||||    
T  28068534 aatttcaaatttactttcactta 28068556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 545 - 651
Target Start/End: Complemental strand, 19435710 - 19435605
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| ||| |||| |||| |||||||| || |||||| |||||||||||||||||    
T  19435710 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctaatccgacaagtctattgacgacacttgac-aactataatttaaacaa 19435612  T
Q  645 ttttcaa 651  Q
    |||||||    
T  19435611 ttttcaa 19435605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 615
Target Start/End: Original strand, 17954288 - 17954336
Alignment:
Q  567 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 615  Q
    |||| |||||||||||||||||| ||| |||  ||||||||||||||||    
T  17954288 tcgtaaccggcacacgaactagaacattctaacccggcaagcctattga 17954336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 230 - 562
Target Start/End: Complemental strand, 76992 - 76660
Alignment:
Q  230 tctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccgaatgaaa 329  Q
    ||||| |||| ||| ||||||||||||| |||| ||||||| |||||  ||| |||||||||| |||| | | | ||||||||| || |||  ||||||     
T  76992 tctttaactaaggttttaaggttgggcaataaatccataagaaattaatttcccttctagtggagatcttggtaatgggtgacaccctcactaaatgaag 76893  T
Q  330 gaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactaccatagaa 429  Q
    |||||||||   || | ||||| ||||  |||| | |||||||||||||||||||||| | | || | ||||| | |||| || | ||||||||| | ||    
T  76892 gaaaattgactgaataaaggacaagacgacaaa-atagtgagacaaatcaaagaccaaaagaaatcacaagattgaacaataagtaacactaccacataa 76794  T
Q  430 tgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaaccga 529  Q
    ||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  76793 tgctaatagattttcgcaagtaaatggtgtcgcggttcacaatttactagcaagaatctattttcattctatgtctgcacctattaggacctactaccat 76694  T
Q  530 gctctgataccaac-ttgtcacgacccaaaattc 562  Q
    |||||||||||||| |||||||||  ||||||||    
T  76693 gctctgataccaactttgtcacgattcaaaattc 76660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 545 - 666
Target Start/End: Complemental strand, 10416641 - 10416520
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||    
T  10416641 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacacttgacaaactacaatttaaacaa 10416542  T
Q  645 ttttcaaattgactttcactta 666  Q
    ||||||||||||||||||||||    
T  10416541 ttttcaaattgactttcactta 10416520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 545 - 678
Target Start/End: Complemental strand, 4698597 - 4698464
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  4698597 tgtcacgacccaaaattcaatttcgtgaccggcgcatgaactagaacatcctagtccggcaagtctattaacgacccttgacaaactataatttaaacaa 4698498  T
Q  645 ttttcaaattgactttcacttatgatgatgtcca 678  Q
    ||||||||||||||||||||| | ||||| ||||    
T  4698497 ttttcaaattgactttcacttgtaatgatatcca 4698464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 458 - 557
Target Start/End: Original strand, 9310540 - 9310639
Alignment:
Q  458 gccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaaccgagctctgataccaac-ttgtcacgaccca 556  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  9310540 gccgcggttcacaatttactagcaagaatctattttcattc-atgtctgcagctattaggacctacaaccgggctctgatatcaactttgtcacgaccca 9310638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 544 - 653
Target Start/End: Original strand, 808176 - 808285
Alignment:
Q  544 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  808176 ttgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaaca 808275  T
Q  644 attttcaaat 653  Q
    ||||| ||||    
T  808276 atttttaaat 808285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 545 - 651
Target Start/End: Complemental strand, 2588533 - 2588428
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    |||||||||||||||||||   |||||| |||| ||||||||||| |||||||||||||||||||||||||| || |||| | ||||||| |||||||||    
T  2588533 tgtcacgacccaaaattcacaatcgtgaacggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttggc-aactatagtttaaacaa 2588435  T
Q  645 ttttcaa 651  Q
    |||||||    
T  2588434 ttttcaa 2588428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 224 - 462
Target Start/End: Original strand, 9305879 - 9306115
Alignment:
Q  224 acgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccga 323  Q
    ||||||||||| |||| ||| |||||||||| || ||||| ||||||||||||  ||| |||||||||| |||| | | | ||||||||| |  |||  |    
T  9305879 acgacctctttaactaaggt-ttaaggttggccaataaactcataaggaattaatttcccttctagtggagatcttggtaatgggtgacaccttcacaaa 9305977  T
Q  324 atgaaagaaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactacc 423  Q
    ||| | |||||||||   || ||||||| ||||  |||| | |||||||| ||||||| |||||  || || | ||||| ||||||||| |||||| |||    
T  9305978 atgcaggaaaattgaccgaatataggacaagacgacaaa-agagtgagaccaatcaaaaaccaaataaaatcacaagattggacaacaagtgacacaacc 9306076  T
Q  424 atagaatgcaaatagatttttgaaagtaaatggtgccgc 462  Q
     |||||||| |||||||||||| ||||||||||||||||    
T  9306077 gtagaatgctaatagatttttgcaagtaaatggtgccgc 9306115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 613
Target Start/End: Complemental strand, 44324810 - 44324742
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 613  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  44324810 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 44324742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 615
Target Start/End: Complemental strand, 45333356 - 45333308
Alignment:
Q  567 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 615  Q
    ||||||||||| ||||||||||| ||| |||| ||||||||||||||||    
T  45333356 tcgtgaccggcgcacgaactagaacattctagcccggcaagcctattga 45333308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 402 - 557
Target Start/End: Complemental strand, 27684874 - 27684718
Alignment:
Q  402 tcggacaacaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctat 501  Q
    ||||||||||||||| ||||||||||| | | ||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  27684874 tcggacaacaaatgagactaccatagagttctaatagctttttgcgagtaaatggtgccgcggttcacaatttactagcaaaaatctattatcactctat 27684775  T
Q  502 gtctgcagctattaggacctacaaccgagctctgataccaac-ttgtcacgacccaa 557  Q
    ||||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||    
T  27684774 gtctgcagctatttggacctaaaaccgggctctgataccaactttgtcacgacccaa 27684718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 544 - 666
Target Start/End: Complemental strand, 33063811 - 33063689
Alignment:
Q  544 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    |||||||||||||||||||||| || ||||||||  ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||    
T  33063811 ttgtcacgacccaaaattcaatatcatgaccggcgtacgaactagagcaccctagtccggcaagcctattgacgacacttgacaaactataatttaaaca 33063712  T
Q  644 attttcaaattgactttcactta 666  Q
    |||||||||||||||||||||||    
T  33063711 attttcaaattgactttcactta 33063689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 557 - 667
Target Start/End: Complemental strand, 30131025 - 30130915
Alignment:
Q  557 aaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattga 656  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30131025 aaattcaatttcgtgatcggcgcacgaactagagcttcctagtccggaaagcctattgacgacccttgacaaactataatttaaacaattttcaaattga 30130926  T
Q  657 ctttcacttat 667  Q
    |||||||||||    
T  30130925 ctttcacttat 30130915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 545 - 666
Target Start/End: Complemental strand, 27527946 - 27527824
Alignment:
Q  545 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||| ||||   ||||||||| | ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  27527946 tgtcacgacccaaaaattcacaatcgtgaccgacgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 27527847  T
Q  644 attttcaaattgactttcactta 666  Q
    |||||||||||||||||||||||    
T  27527846 attttcaaattgactttcactta 27527824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 545 - 679
Target Start/End: Complemental strand, 33056334 - 33056197
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt---gacaacccttgacaaactataatttaaa 641  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||| | |||||||||| |||||||||   ||| || |||||||||||||||||||||    
T  33056334 tgtcaagacccaaaattcaatatcgtgaccggcgcacgaactagagtaccctagtccggtaagcctattgacgacgacacttgacaaactataatttaaa 33056235  T
Q  642 caattttcaaattgactttcacttatgatgatgtccat 679  Q
    ||||||| |||||||||||||||||  ||||| |||||    
T  33056234 caatttttaaattgactttcacttaaaatgatatccat 33056197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 554 - 659
Target Start/End: Original strand, 15969961 - 15970066
Alignment:
Q  554 ccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaat 653  Q
    ||||||||||   ||||||||||| |||||| |||| |||| ||| |||||||| ||| |||| || |||||||||||||||||||||||||||||||||    
T  15969961 ccaaaattcacaatcgtgaccggcgcacgaaatagaacatcgtagcccggcaagtctaatgacgacacttgacaaactataatttaaacaattttcaaat 15970060  T
Q  654 tgactt 659  Q
    ||||||    
T  15970061 tgactt 15970066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 545 - 650
Target Start/End: Complemental strand, 28041408 - 28041304
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||| |||| ||||||| || |||| | |||||||||||||||||    
T  28041408 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggtaagcttattgacgacacttggc-aactataatttaaacaa 28041310  T
Q  645 ttttca 650  Q
    ||||||    
T  28041309 ttttca 28041304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 613
Target Start/End: Complemental strand, 22014702 - 22014634
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 613  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  22014702 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 22014634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 548 - 665
Target Start/End: Complemental strand, 6952903 - 6952786
Alignment:
Q  548 cacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattt 647  Q
    |||||||||||||| ||  || |||||||  ||| ||||||| || ||||||  | ||||| ||||||| || |||| ||||||||||||||||||||||    
T  6952903 cacgacccaaaatttaaaatcctgaccggtgcacaaactagaacaacctagtatgacaagcttattgacgacacttggcaaactataatttaaacaattt 6952804  T
Q  648 tcaaattgactttcactt 665  Q
    | ||||| ||||||||||    
T  6952803 ttaaattaactttcactt 6952786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 542 - 616
Target Start/End: Original strand, 25477662 - 25477735
Alignment:
Q  542 acttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 616  Q
    ||||||||||||||||| ||||   |||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  25477662 acttgtcacgacccaaa-ttcacaatcgtaaccggcgcacgaactagaacatcctagtccggcaagcctattgac 25477735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 440 - 491
Target Start/End: Original strand, 16692837 - 16692888
Alignment:
Q  440 tttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctatt 491  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  16692837 tttttgaaagtaaacggtgccgtggttcacaatttactagcaaaaatctatt 16692888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 615
Target Start/End: Complemental strand, 14011732 - 14011684
Alignment:
Q  567 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 615  Q
    |||||| |||| ||||||||||| ||| |||| ||||||||||||||||    
T  14011732 tcgtgatcggcgcacgaactagaacattctagcccggcaagcctattga 14011684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 31394047 - 31394015
Alignment:
Q  229 ctctttgactagggtcttaaggttgggcagtaa 261  Q
    ||||||||||||||||||||||||||| |||||    
T  31394047 ctctttgactagggtcttaaggttgggaagtaa 31394015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 543 - 666
Target Start/End: Complemental strand, 28804256 - 28804133
Alignment:
Q  543 cttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 642  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||  || ||||||||||||||||||||||    
T  28804256 cttgtcacgacccaaaatttaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagtctattgatgacacttgacaaactataatttaaac 28804157  T
Q  643 aattttcaaattgactttcactta 666  Q
    |||||| ||||||  |||||||||    
T  28804156 aatttttaaattgtttttcactta 28804133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 535 - 666
Target Start/End: Complemental strand, 26525503 - 26525371
Alignment:
Q  535 gataccaactt-gtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactat 633  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||| | | |||| ||| |||| |||||||| || |||||||||||||    
T  26525503 gataccaactttgtcacgaccaaaaattcaatatcgtgaccggcgcacgaactagaactttctagcccgacaagtctattgacgacacttgacaaactat 26525404  T
Q  634 aatttaaacaattttcaaattgactttcactta 666  Q
    ||||| || | ||||||| ||||||| ||||||    
T  26525403 aatttgaaaatttttcaatttgacttccactta 26525371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 615
Target Start/End: Original strand, 36263730 - 36263778
Alignment:
Q  567 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 615  Q
    ||||||||||| ||||||||||| |||  ||| ||||||||||||||||    
T  36263730 tcgtgaccggcgcacgaactagaacattttagcccggcaagcctattga 36263778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 543 - 662
Target Start/End: Original strand, 5358101 - 5358221
Alignment:
Q  543 cttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 642  Q
    ||||||||||||||||||  ||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5358101 cttgtcacgacccaaaatctaaaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgacaaactataatttaaac 5358200  T
Q  643 aattttcaaa-ttgactttca 662  Q
    |||||||||| ||||||||||    
T  5358201 aattttcaaatttgactttca 5358221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 548 - 665
Target Start/End: Original strand, 30873893 - 30874010
Alignment:
Q  548 cacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattt 647  Q
    |||| ||||||||||||  ||||||||||| ||| ||||||| |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  30873893 cacggcccaaaattcaaaatcgtgaccggcgcacaaactagaacatcttagtccggcaagcctattgacgacacttgacaaactataatttaaacaattt 30873992  T
Q  648 tcaaattgactttcactt 665  Q
    | |||||||| |||||||    
T  30873993 ttaaattgaccttcactt 30874010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 545 - 651
Target Start/End: Original strand, 27560628 - 27560733
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    ||||| |||||||||||||   ||||||||||| ||||||||||| ||||||||| |||||||||||||||| || |||| | |||||||||||||||||    
T  27560628 tgtcaggacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagcctattgacgacacttggc-aactataatttaaacaa 27560726  T
Q  645 ttttcaa 651  Q
    |||||||    
T  27560727 ttttcaa 27560733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 545 - 639
Target Start/End: Complemental strand, 51534327 - 51534234
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataattta 639  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||| || |||||| ||||||||||||    
T  51534327 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgaccacacttgac-aactataattta 51534234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 545 - 639
Target Start/End: Original strand, 18693730 - 18693823
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataattta 639  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||| || | |||| ||||||||||||    
T  18693730 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgacgacacatgac-aactataattta 18693823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 544 - 666
Target Start/End: Original strand, 28602613 - 28602735
Alignment:
Q  544 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||||||||   ||||||||||| |||||| |||| ||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  28602613 ttgtcacgacccaaaattcacaatcgtgaccggcgcacgaattagaacatcctagtccggcaagcctattaacgacacttgacaaactataatttaaaca 28602712  T
Q  644 attttcaaattgactttcactta 666  Q
    |||||||||| ||  ||||||||    
T  28602713 attttcaaatcgaaattcactta 28602735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 545 - 655
Target Start/End: Complemental strand, 15925635 - 15925525
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    ||||||||||||||||| ||| ||||||||||| ||| || ||||||||||||||||| ||||||||||||   | ||||| || |||||||||||||||    
T  15925635 tgtcacgacccaaaatttaatatcgtgaccggcgcacaaattagagcatcctagtccgtcaagcctattgatggcacttgataacctataatttaaacaa 15925536  T
Q  645 ttttcaaattg 655  Q
    |||||||||||    
T  15925535 ttttcaaattg 15925525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 545 - 653
Target Start/End: Original strand, 4706151 - 4706259
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    |||||||||||||||||||   ||||||||||| ||| ||||||| |||||||||||||||||||  ||||| || ||| ||||||||||||||||||||    
T  4706151 tgtcacgacccaaaattcacaatcgtgaccggcgcacaaactagaacatcctagtccggcaagcccgttgacgacacttaacaaactataatttaaacaa 4706250  T
Q  645 ttttcaaat 653  Q
    |||| ||||    
T  4706251 tttttaaat 4706259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 615
Target Start/End: Complemental strand, 18983119 - 18983071
Alignment:
Q  567 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 615  Q
    ||||||||||| ||||||||||| ||| ||||  |||||||||||||||    
T  18983119 tcgtgaccggcgcacgaactagaacattctagctcggcaagcctattga 18983071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 567 - 666
Target Start/End: Complemental strand, 1388 - 1289
Alignment:
Q  567 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcactta 666  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  1388 tcgtgaccggcgcacgaactagaacatcctagtccggaaagcctaatgacaacacttgacaaactataatttaaataattttcaaattgacttacactta 1289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 544 - 637
Target Start/End: Complemental strand, 10399 - 10306
Alignment:
Q  544 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatt 637  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  10399 ttgtcacgacccaaaatttaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgatgacacttgacaaactataatt 10306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 547 - 666
Target Start/End: Original strand, 406455 - 406574
Alignment:
Q  547 tcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaatt 646  Q
    ||||||||||||||||||  |||||| |||| ||||||||||| |||||| ||| |  || ||||||||| |  ||||||||||||||||||||| ||||    
T  406455 tcacgacccaaaattcaaaatcgtgatcggcgcacgaactagaacatccttgtcagtaaaacctattgacgaaacttgacaaactataatttaaataatt 406554  T
Q  647 ttcaaattgactttcactta 666  Q
    || |||||||||||||||||    
T  406555 tttaaattgactttcactta 406574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 666
Target Start/End: Original strand, 412530 - 412574
Alignment:
Q  622 ttgacaaactataatttaaacaattttcaaattgactttcactta 666  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||    
T  412530 ttgagaaactataatttaaataatttttaaattgactttcactta 412574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 666
Target Start/End: Original strand, 423827 - 423945
Alignment:
Q  547 tcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaatt 646  Q
    |||||||||||||||||   | |||| |||  ||| ||||| | ||| ||||||||  ||  |||||||| |  |||||||||||||| |||||||||||    
T  423827 tcacgacccaaaattcacaattgtgatcggtgcacaaactaaaacattctagtccgaaaaatctattgacgaaacttgacaaactata-tttaaacaatt 423925  T
Q  647 ttcaaattgactttcactta 666  Q
    || ||||||| |||||||||    
T  423926 tttaaattgattttcactta 423945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 544 - 666
Target Start/End: Original strand, 115262 - 115384
Alignment:
Q  544 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||||||||   || ||| |||| |||||||||||  |||||| || |||||| |||||||| || ||||||| |||||||||||||||    
T  115262 ttgtcacgacccaaaattcacaatcatgatcggcgcacgaactagaatatcctaatcaggcaagtctattgacgacacttgacacactataatttaaaca 115361  T
Q  644 attttcaaattgactttcactta 666  Q
    ||||||||||||| |||||||||    
T  115362 attttcaaattgattttcactta 115384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 545 - 665
Target Start/End: Original strand, 233054 - 233174
Alignment:
Q  545 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 644  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||| ||||||||| || |||| | || |    
T  233054 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagtctattgacaacacttgacaaattaaaattcagacta 233153  T
Q  645 ttttcaaattgactttcactt 665  Q
    ||| ||| |||||||||||||    
T  233154 tttccaatttgactttcactt 233174  T

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Target: scaffold0654 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 544 - 664
Target Start/End: Original strand, 3957 - 4077
Alignment:
Q  544 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||||||||   | |||| |||| ||||||||||| |||||||||| |||||| ||||| || || |||| || |||||||||||||||    
T  3957 ttgtcacgacccaaaattcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattaacgacacttggcacactataatttaaaca 4056  T
Q  644 attttcaaattgactttcact 664  Q
    ||||| ||||||| |||||||    
T  4057 atttttaaattgattttcact 4077  T

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Target: scaffold0654; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 544 - 664
Target Start/End: Original strand, 5309 - 5431
Alignment:
Q  544 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaac--tataatttaaa 641  Q
    ||||||||||||||||||||   | |||| |||| ||||||||||| |||||||||| |||||| |||||||| || ||||||| ||  |||||||||||    
T  5309 ttgtcacgacccaaaattcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattgacgacacttgacacactatataatttaaa 5408  T
Q  642 caattttcaaattgactttcact 664  Q
    ||||||| ||||||| |||||||    
T  5409 caatttttaaattgattttcact 5431  T

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Target: scaffold0406 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 544 - 645
Target Start/End: Complemental strand, 4228 - 4129
Alignment:
Q  544 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 643  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | ||||||||||||||||    
T  4228 ttgtcacgacccaaa-ttcacaatcgtgaccggcgcacgaactagaacatcctagtccagcaagcctattgacgacacttggc-aactataatttaaaca 4131  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 613
Target Start/End: Complemental strand, 61256 - 61210
Alignment:
Q  567 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 613  Q
    ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  61256 tcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 61210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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