View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_high_9 (Length: 546)
Name: NF12931_high_9
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 25469823 - 25469309
Alignment:
| Q |
1 |
ttagcttattcatgcatatgttgagaatgcttcgtgctttggatagttaagttcccggtccatcctcatttttacataataagagcattagctgcaactt |
100 |
Q |
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|||||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25469823 |
ttagcttattcatgcataggctgagaatgcttagtgctttggatagttaagttct-ggtccatcctcatttttacataataagagcattagctgcaattt |
25469725 |
T |
|
| Q |
101 |
tatcattttaattaagttgatagtaagtgatttatcacttaaaattgattttgcattcaagtgtgcattcaacttcaaacatttttccttnnnnnnnttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |
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| T |
25469724 |
tatcattttaattaagttgatagtaagtgatttatcacttaaaattgattatgcattcaa------------cttcaaacatttttccttcaaaaaattc |
25469637 |
T |
|
| Q |
201 |
aaatattttgtatatatatttatcaacttttgttgaagatcatttctttggtttgtaagtggcggttgggcgttggccatactatatctatatctatgta |
300 |
Q |
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| T |
25469636 |
aaatattttgtatatatatttatcaacttttgttgaagatcatttctttggtttgtaagtggcggttgggcgttggccatactatatctatatctatgta |
25469537 |
T |
|
| Q |
301 |
gcaccaacacttcttattgaatgtgtgtctgatgttcaagaccgtttaattcaattatgttattatttcgagcatgtgtctgatatccgtgtgcatc-gg |
399 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
25469536 |
gcaccaacacttcttattgaatgtgtgtctgatgtccaagaccgttaaattcaattatgttattatttcgagtatgtgtctgatatccgtgtgcatcggg |
25469437 |
T |
|
| Q |
400 |
tggttcatagattataactattctgatttaagtatggtggatggtaactttcataaatttataagttgatggatggattccacctaaacttaaaacgcta |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25469436 |
tggttcatagattataactattctgatttaagtatggtggatggtaactttcataaatttataagttgatggatggattccacctaaacttaaaacgcta |
25469337 |
T |
|
| Q |
500 |
gcagattgaccatccccatcgccatttt |
527 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
25469336 |
gcagattgaccatccccatcgccatttt |
25469309 |
T |
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Back To:
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 16742993 - 16742952
Alignment:
| Q |
294 |
ctatgtagcaccaacacttcttattgaatgtgtgtctgatgt |
335 |
Q |
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| T |
16742993 |
ctatgtagcaccaacacttcatatcgaaggtgtgtctgatgt |
16742952 |
T |
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