View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_11 (Length: 557)
Name: NF12931_low_11
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Original strand, 12305854 - 12306382
Alignment:
| Q |
19 |
tacataattcacatgaagttctgctacaaaaacactgacttctttttatggatttcgatattcatgatttatacttcaatggagacagaagcttttcttt |
118 |
Q |
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| T |
12305854 |
tacataattcacatgaagttatgctacaaaaacactgacttctttttatggatttcgatattcatgatttatacttcaatgaagacagaagcttttcttt |
12305953 |
T |
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| Q |
119 |
tttatattcaatcgatgaagaaatgaagattactatagtttaaagcagttcttagtaacttcatacttcttattttaattggaatgttaacttggcactt |
218 |
Q |
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| T |
12305954 |
tttatattcaatcgatgaagaaatgaagattactatagtttaaagcagttcttagtaacttcatacttcttattttaattggaatgttaacttggcactt |
12306053 |
T |
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| Q |
219 |
gaattgttatttcttaggatattagcccctaccacatatatattttttgcatcagcaattccagttatttcatttggagaacaattgcaaagagatacag |
318 |
Q |
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| T |
12306054 |
gaattgttatttcttaggatattagcccctaccacatatatattttttgcatcagcaattccagttatttcatttggagaacaattgcaaagagatacag |
12306153 |
T |
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| Q |
319 |
gtacattgttaattttatcgatgcatgaaatcttgctatataaaaagcgatgataatttagtatatcttcaattgaatgttatgtgtaccaacaatgtct |
418 |
Q |
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| T |
12306154 |
gtacattgttaatttcatcgatgcatggaatcttgttatataaaaagcaatgataatttagtatatcttcaattgaatgttatgtgtaccaacaatgtct |
12306253 |
T |
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| Q |
419 |
agatgggatactcactgctatacaaacattagcatctactgcactgtgtggaattatacactctattattggaggccagcctttgttgattcttggtgta |
518 |
Q |
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| T |
12306254 |
agatgggatactcactgctgtacaaacattagcatctactgcactgtgtggaattatacactctattattggaggccagcctttgttgatacttggtgta |
12306353 |
T |
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| Q |
519 |
gcagaaccaactgtaatcatgtatatatt |
547 |
Q |
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| T |
12306354 |
gcagaaccaactgtaatcatgtatatatt |
12306382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 541
Target Start/End: Complemental strand, 49708616 - 49708517
Alignment:
| Q |
442 |
aaacattagcatctactgcactgtgtggaattatacactctattattggaggccagcctttgttgattcttggtgtagcagaaccaactgtaatcatgta |
541 |
Q |
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||||||| ||||||||||| | ||||||||||| || || ||||| || ||||| |||||||||||| | || || |||||||||||||| || ||||| |
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| T |
49708616 |
aaacattggcatctactgccatttgtggaattattcattcaattataggtggccaacctttgttgattttaggagttgcagaaccaactgttataatgta |
49708517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 34927292 - 34927246
Alignment:
| Q |
252 |
acatatatattttttgcatcagcaattccagttatttcatttggaga |
298 |
Q |
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| T |
34927292 |
acatacatattttttgcttcagcaattcctgttatttcttttggaga |
34927246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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