View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_14 (Length: 524)
Name: NF12931_low_14
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 4467868 - 4467362
Alignment:
| Q |
1 |
tgtgtgatggctcttcagagtttcatgtttactcaaagaaaagttggttgactttctgtcctgaacaaggtgcacttgtaatcactgccggagatcaaat |
100 |
Q |
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| T |
4467868 |
tgtgtgatggctcttcagagtttcatgtttactcaaagaaaagttggttgactttctgtcctgaacaaggtgcacttgtaatcactgcgggagatcaaat |
4467769 |
T |
|
| Q |
101 |
ccaggttattttacatttttgctttctctttctacataatagtgatagtatttcaacaaaacaaaaaactccacctacacttttgttttaaaaatgaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467768 |
ccaggttattttacatttttgctttctctttctacataatagtgatagtatttcaacaaaacaaaaaactccacctacacttttgttttaaaaatgaaca |
4467669 |
T |
|
| Q |
201 |
attatatatagatcttaaaaataaacaaaactaacctcttaatgttagtgtgtcaatattttgactataccttcaatctttcatgacagcaaaattgctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467668 |
attatatatagatcttaaaaataaacaaaactaacctcttaatgttagtgtgtcaatattttgactataccttcaatctttcatgacagcaaaattgctg |
4467569 |
T |
|
| Q |
301 |
atagatattatatctgcctatctcacttaacgagtttgatattgcttggctataggtattgagtggagggcattacaaggatgtaattggaaaggcaata |
400 |
Q |
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| T |
4467568 |
atagatattatatctgcctatctcacttaacgagtttgatattgcttggctataggtattgagtggagggcattacaaggatgtaattggaaaggcaata |
4467469 |
T |
|
| Q |
401 |
tttaaaggcaaaagagaagacaacatttcaatggctttcctctattctcctcaaaattccaagaaacttcaaacaaatatggaaagacctatttcacttg |
500 |
Q |
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| T |
4467468 |
tttaaaggcaaaagagaagacaacatttcaatggctttcctctattctcctcaaaattccaagaaacttcaaacaaatatggaaagacctatttcacttg |
4467369 |
T |
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| Q |
501 |
gccaaca |
507 |
Q |
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| T |
4467368 |
gccaaca |
4467362 |
T |
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Back To:
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 453
Target Start/End: Original strand, 8365227 - 8365313
Alignment:
| Q |
368 |
gggcattacaaggatgtaattggaaaggcaatatttaaaggcaaaagagaaga-caacatttcaatggctttcctctattctcctca |
453 |
Q |
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||||| ||||| |||| ||| ||||| || | ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
8365227 |
gggcactacaaacatgtgattagaaagccattttttaaagttaaaagagaagatcaacatttcaatggctttcctgtattctcctca |
8365313 |
T |
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