View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_18 (Length: 488)
Name: NF12931_low_18
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 1673556 - 1673969
Alignment:
| Q |
1 |
catcctcttcaagtctctacgtagaaaactatttttaacatccaatttttgccacaaacatgaaaatctagattcaaatttttacatctttcatttatta |
100 |
Q |
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| T |
1673556 |
catcctcttcaaatctctgcgtagaaaaatatttttaacatccaatttttgccacaaacatgaaaatctagattcaaatctttacgtctttcatttatta |
1673655 |
T |
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| Q |
101 |
gagttttcaaagttcagtaagtcacctcacatggtttctgtcagagaattagtttgcatttaagtcaagttcaacgtcataacagtaccatcagataacc |
200 |
Q |
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| T |
1673656 |
gagttttcaaagttcagtaagtcacctcacatggtttctgtcagagaattagtttgcatttaagtcaagttcaacgtcataacagtaccatcagataacc |
1673755 |
T |
|
| Q |
201 |
aacttctacaagaaaaaagtttataatgttgttattttcttggtggttgaattgattgagcttccataattcataacacatattcatcacattcactttc |
300 |
Q |
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| T |
1673756 |
aacttctacaagaaaaaagtttatagtgttgttattttcttggtggttgaattgattgagctt-cataattcataacacatattcatcac-ttcactttc |
1673853 |
T |
|
| Q |
301 |
tttgccccaagcttggttaccttttccttaaaccaaatacagttgacagcgactaaatatttaatcttgtcatctcatgagtcgtgaccttatcaactta |
400 |
Q |
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| T |
1673854 |
tttgccccaagcttggttaccttttccttaaaccaaatacagttgacagcgactaaatatttaatcttgtcatctcatgagtcgtgaccttat--actta |
1673951 |
T |
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| Q |
401 |
gttatctaccttattaat |
418 |
Q |
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| T |
1673952 |
gttatctaccttattaat |
1673969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 419 - 480
Target Start/End: Original strand, 1674119 - 1674180
Alignment:
| Q |
419 |
gtattaaaatgaattataaaatcataaatgttataattattactactagattagttcatctc |
480 |
Q |
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| T |
1674119 |
gtattaaaatgaattataaaatcataaatgttataattattactactagattagttcatctc |
1674180 |
T |
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