View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_19 (Length: 486)
Name: NF12931_low_19
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 1957036 - 1957317
Alignment:
| Q |
1 |
tcaatgaggagacatacaccaaaaagggtttggaatgggtgaacacaactgagagcttaaaggaagtgattgatcgtcatcatccaggaatgacacaaaa |
100 |
Q |
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| T |
1957036 |
tcaatgaggagacatacaccaaaaagggtttggaatgggtgaacacaactgagagcttaaaggaagtgattgatcgtcaccatccaggaatgacacaaaa |
1957135 |
T |
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| Q |
101 |
gtggttaaatgcttcaagtgctttctctgtttgggatgcaccccctaacaaagacaatccaattccactttatcttcgtattcctagttaatcaatttga |
200 |
Q |
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| T |
1957136 |
gtggttgaatgcttcaagtgctttctctgtttgggatgcacccccaaacaaattcaatccaattccactttatcttcgtattcctagttaatcaatttga |
1957235 |
T |
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| Q |
201 |
ctaagcaatatgaaatatgctagcaacacacttttttcaatgcagactttttaatttgtggaaagtcaaatgagtctcgtta |
282 |
Q |
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| T |
1957236 |
ctaagcaatatgaaatatgctagcaacacattttttttaatgcagactctttaatttgtgaaaattaaaacgagtttcgtta |
1957317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 1942118 - 1942314
Alignment:
| Q |
2 |
caatgaggagacatacaccaaaaagggtttggaatgggtgaacacaactgagagcttaaaggaagtgattgatcgtcatcatccaggaatgacacaaaag |
101 |
Q |
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| T |
1942118 |
caatgaggagacatacactgaaaagggtttgaaatgggtgaacacaactgaaaccttaaaggatgtgattgatcgtcactacccaaaaatgacaaacaaa |
1942217 |
T |
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| Q |
102 |
tggttaaatgcttcaagtgctttctctgtttgggatgcaccccctaacaaagacaatccaattccactttatcttcgtattcctagttaatcaattt |
198 |
Q |
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| T |
1942218 |
tggttgaatgcttcaagtgctttctctgtttgggatgcaccaccaaacaaacacaaccctattccaatttacttgcgtgttcctagttaatcaattt |
1942314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 1928141 - 1928306
Alignment:
| Q |
2 |
caatgaggagacatacaccaaaaagggtttggaatgggtgaacacaactgagagcttaaaggaagtgattgatcgtcatcatccaggaatgacacaaaag |
101 |
Q |
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||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| || |||||||||||||| |||||| ||||||| | || |
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| T |
1928141 |
caatgaggagacatacaccaaaaaggggttagaatgggtcaacacaactgagagcttaaaagatgtgattgatcgtcaccatccacaaatgacaaacaaa |
1928240 |
T |
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| Q |
102 |
tggttaaatgcttcaagtgctttctctgtttgggatgcaccccctaacaaagacaatccaattcca |
167 |
Q |
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| T |
1928241 |
tggatgaactcttccagtgctttctctgtttgggactcaccctcaatcaaacacaatcctattcca |
1928306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 1957462 - 1957525
Alignment:
| Q |
333 |
tatagtaatgaataaaactaaggataggaataatgaaatgagtgtggcaactcatctagaagaa |
396 |
Q |
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| T |
1957462 |
tatagtaatgaataaaactaaggataggaataatgaaatgagtgtggcaactcatctagaagaa |
1957525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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