View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_2 (Length: 942)
Name: NF12931_low_2
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 789; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 18 - 932
Target Start/End: Complemental strand, 41281291 - 41280368
Alignment:
| Q |
18 |
ataaaccccaaattgaaattatttaccacttatcaagttatcacatgctctattc-tcttatataatctcattatataaaccaaagagcatgcaagagta |
116 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41281291 |
ataaatcccaaattgaaattatttaccacttatcaagttatcacatgctctattcctcttatataatctcattatataaaccaaagagcatgcaagagta |
41281192 |
T |
|
| Q |
117 |
ctcctcagtcctcagctagcacaaacccaaaaaatattaaaaccaaaatggagagatcaccactaaaccttatggtgagtttcttcaacataccaccatt |
216 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41281191 |
ctcctcag-------ctagcaaaaacccaaaaaatattaaaaccaaaatggagagatcaccactaaaccttatggtgagtttcttcaacattccaccatt |
41281099 |
T |
|
| Q |
217 |
gtggagagagtgtctctcttcagcatttagaaccgccttagcttgcaccatagtagcaggtgcaacactttatggacctatttcaattacaagcctaata |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41281098 |
gtggagagagtgtctctcttcagcatttagaaccgccttagcttgcaccatagtagctggtgcaacactttatggacctatttcaattacaagcctaata |
41280999 |
T |
|
| Q |
317 |
acattccctgcattttcatacgtggttgtgattctcattatcataaatgatgctactttaggtgactctctacgtggttgttggctagggctttatgcta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280998 |
acattccctgcattttcatacgtggttgtgattctcattatcataaatgatgctactttaggtgactctctacgtggttgttggctagggctttatgcta |
41280899 |
T |
|
| Q |
417 |
caattcaaagtttaggaccagctatgttgagtttatgggctataggtccaaatcatttctctaaaggaactgcttctattgcggtggcattggctgcatt |
516 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
41280898 |
caattcaaagtttaggtccagctatgttgagtttatgggctataggtccaaatcatttctctaaaggaactgcttctattgctgtggcattggctgcatt |
41280799 |
T |
|
| Q |
517 |
tgttgtggttttaccttctcaatcaacacatttgatagctaagagaatttcattgggtcagattgtgttggtgtatgtgttggcttattctaatggtgct |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41280798 |
tgttgtggttttaccttctcaatcaacacatttgatagctaagagaatttcattgggtcagattgtgttggtgtatgtgttggcttattctaatggtgct |
41280699 |
T |
|
| Q |
617 |
catattgatcctattatgcatcctattcatttggctgctagtactgctttaggtgtaattgcttgtgtgcttgcattgcttcttccttaccctcgttttg |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41280698 |
catattgatcctattatgcatcctattcatttggctgctagtactgctttaggtgtaattgcttgtgtgcttgcattgcttcttccttaccctcgttttg |
41280599 |
T |
|
| Q |
717 |
cttgctaccaggtaattttatcattttctttcttgctatgtttagagacattaattacac--nnnnnnnatgctcatatgtccatgctatgaaattgttt |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
41280598 |
cttgctaccaggtaattttatcattttctttcttgctatgtttagagacattaattacactttttttttatgctcatatgtccatgctatgaaattgttt |
41280499 |
T |
|
| Q |
815 |
atattatattaatgtttgtattattcctctaaatacacacac-------------tactaaaatattagaataattgagacacctttgttactctcatgt |
901 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
41280498 |
atattatattaatgtttgtattattcctctaaatacacacacacacacactagtatactaaaatattaaaataattgagacacctttgttactctcgtgt |
41280399 |
T |
|
| Q |
902 |
cttttttgttgttgttgttgtgacttctgtg |
932 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
41280398 |
cttttttgttgttgttgttgtgacttctgtg |
41280368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 679
Target Start/End: Original strand, 38806444 - 38806483
Alignment:
| Q |
640 |
tattcatttggctgctagtactgctttaggtgtaattgct |
679 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
38806444 |
tattcatttggcagctagtactgctttatgtgtaattgct |
38806483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 5e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 665 - 773
Target Start/End: Complemental strand, 34981887 - 34981782
Alignment:
| Q |
665 |
ttaggtgtaattgcttgtgtgcttgcattgcttcttccttaccctcgttttgcttgctaccaggtaattttatcattttctttcttgctatgtttagaga |
764 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
34981887 |
ttaggtgtaattgcttgtgtggttgcatt---tcttccttgccctccttttgcttgctaccaggtaattttatcattttctttcatgctatgtttcgaga |
34981791 |
T |
|
| Q |
765 |
cattaatta |
773 |
Q |
| |
|
||||||||| |
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|
| T |
34981790 |
cattaatta |
34981782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 635 - 683
Target Start/End: Original strand, 34981612 - 34981660
Alignment:
| Q |
635 |
catcctattcatttggctgctagtactgctttaggtgtaattgcttgtg |
683 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||| ||||||||||||||| |
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|
| T |
34981612 |
catcttattcatttggcagctagtactcctttatgtgtaattgcttgtg |
34981660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 679
Target Start/End: Original strand, 54185219 - 54185258
Alignment:
| Q |
640 |
tattcatttggctgctagtactgctttaggtgtaattgct |
679 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
54185219 |
tattcatttggcagctagtactgctttatgtgtaattgct |
54185258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 679
Target Start/End: Original strand, 46636669 - 46636708
Alignment:
| Q |
640 |
tattcatttggctgctagtactgctttaggtgtaattgct |
679 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
46636669 |
tattcatttggcagctagtactgctttatgtgtaattgct |
46636708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 679
Target Start/End: Complemental strand, 43514833 - 43514794
Alignment:
| Q |
640 |
tattcatttggctgctagtactgctttaggtgtaattgct |
679 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
43514833 |
tattcatttggcagctagtactgctttatgtgtaattgct |
43514794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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