View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_21 (Length: 452)
Name: NF12931_low_21
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 32251258 - 32250991
Alignment:
| Q |
18 |
atatatgggtgttgtgttgctgatgaaaggttttggtatttgatttttctttaatggagttttggtgcttcatgttgaaaagtgcaggaaggagaatctt |
117 |
Q |
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| T |
32251258 |
atatatgggtgttgtgttgttgatgaaaggttttggtatttgatttttctttaatggagttttggtgcttcatgttgaaacgtgcaggaaggagaatcg- |
32251160 |
T |
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| Q |
118 |
tgagatgtgataattaattattattttttaataatataattgggtaaaaacttagatgactcaaacctggtgttccggtaaacaggtaacaagagtttta |
217 |
Q |
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| T |
32251159 |
---gatgtgataattaattattattttttaataatataattgggtaaaaacttaaatga----aacctggtgttccggtaaacaggtaactagcgttttg |
32251067 |
T |
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| Q |
218 |
aaaagagtgacgtggcttaatttaaaagcgtgtgctgttccgcatttgttagaacgtttgctcttagcattgctca |
293 |
Q |
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| T |
32251066 |
aaaagagtgacgtggcttaatttaaaagtgtgtgttgttctgcgtttgttagagcgtttgctcttaacattactca |
32250991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 293 - 444
Target Start/End: Complemental strand, 36232452 - 36232299
Alignment:
| Q |
293 |
atagagagaatgagggaaactaaatgctttctccacactaaacccgtttttgactttttatcgagaatacattttttatgcagcggtgcaattctataag |
392 |
Q |
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| T |
36232452 |
atagagagaatgagggaaactaaatgctttctccacactaaacccgtttttgacttgttattgagaatacattttttatgcagcggtgcaattctataag |
36232353 |
T |
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| Q |
393 |
aagcaaaaccaacgtgttcatcgtttgaata--ttttagtacaagtagtattat |
444 |
Q |
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| T |
36232352 |
aagcaaaaccaacgtgttcatcatttgaatatttttttgtacaagtagtattat |
36232299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 36226956 - 36227022
Alignment:
| Q |
297 |
agagaatgagggaaactaaatgctttctccacactaaacccgtttttgactttttatcgagaatacatt |
365 |
Q |
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| T |
36226956 |
agagaatgagagaaactaaatgcttccaccac--taaacccgtctttgacttgttattgagaatacatt |
36227022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 8264731 - 8264658
Alignment:
| Q |
213 |
ttttaaaaagagtgacgtggcttaatttaaaagcgtgtgctgttccgcatttgttagaacgtttgctcttagca |
286 |
Q |
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| T |
8264731 |
ttttaaaaagagtaacttggcttaatttagaagcatgtgttcatccgcgtttgttagagcgttagctcctagca |
8264658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 8264883 - 8264823
Alignment:
| Q |
29 |
ttgtgttgctgatgaaaggttttggtatttgatttttctttaatggagttttggtgcttcat |
90 |
Q |
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| T |
8264883 |
ttgtgtggctaatgaaaggttt-ggtgtttgattttgttttaatggagttttgatgcttcat |
8264823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 38789177 - 38789110
Alignment:
| Q |
174 |
tgactcaaacctggtgttccggtaaacaggtaacaagagttttaaaaagagtgacgtggcttaattta |
241 |
Q |
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| T |
38789177 |
tgactcaaacctggtgtgttggtaaacaggtaactggcgttttgaaaagagtaatgtggcttaattta |
38789110 |
T |
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