View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_22 (Length: 449)
Name: NF12931_low_22
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 46893891 - 46893502
Alignment:
| Q |
13 |
aaaatgggattaaggactaaaactaaagtgaataatatttgcaacggctgtttaaaaagattagtaattagttgagggaccaaaactcgaaa-------- |
104 |
Q |
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| T |
46893891 |
aaaatgggattaaagactaaaattaaagtgaataatatttgcaacggctgtttaaaaatattagtaattagttgagggatcaaaactcaaataacgtata |
46893792 |
T |
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| Q |
105 |
--------gggacaaattagataaatacgcctaaaatgaattcatgaaatgtgttctctaaatctatnnnnnnnnnn----------tgtttgctgcact |
186 |
Q |
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| T |
46893791 |
tttttgctgggacaaattagataaatatgcctaaaatgaattcatgaaatgtgttctcta--tctataaaaaaaaaaaaaaaaaaaatgtttgctgcact |
46893694 |
T |
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| Q |
187 |
tgaagagcatgtgctttaactaagaaacatcattcacnnnnnnnnn-caattgaaactcgtcaatgattccattttattatacacacctaagccaatata |
285 |
Q |
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| T |
46893693 |
tgaagagcatgtgctttaactaagaaacatcattcacttttttttttcaattgaaactcgtcaatgattccattttattatacacacctaagccaatata |
46893594 |
T |
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| Q |
286 |
tatgctaccataaattttgaaatggtgttaaataaggatgcgaggaagaattttcattattgaacatttttcattttgaggagtgttatgga |
377 |
Q |
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| T |
46893593 |
tatgctaccataaattttgaaatggtgttaaataaagatgcgaggaagaatttccattattgaacatttttcattttgaggagtgttatgga |
46893502 |
T |
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