View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_24 (Length: 419)
Name: NF12931_low_24
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 36634470 - 36634871
Alignment:
| Q |
1 |
gaatttgttacgttttttattgaaaacattcttgacttgaactccacagtagaaaaattgttttgctgaaattaacattcactctcttatttgtgataga |
100 |
Q |
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| T |
36634470 |
gaatttgttacgttttttattgaaaacattcttgacttgaactccacagtagaaaaattgttttgctgaaattaacattcactctcttatttgtgataga |
36634569 |
T |
|
| Q |
101 |
gactatatgaccacggggctaggaatttttgggtacataacacaggtccacttggatgcttgggtcaaaatgttgccacatttggccatgataaatcaaa |
200 |
Q |
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| T |
36634570 |
gactatatgaccacggggctaggaatttttgggtacataacacaggtccacttggatgcttgggtcaaaatgttgccacatttggccatgataaatcaaa |
36634669 |
T |
|
| Q |
201 |
gattgatgaactaggatgtcttggtgcacacaaccaagctgctaaggcctttaatctacagttgcaagctttgtgggcaaaattgcagggccagtatcta |
300 |
Q |
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| T |
36634670 |
gattgatgaactaggatgtcttggtgcacacaaccaagctgctaaggcctttaatctacagttgcaagctttgtgggcaaaattgcagggccagtatcta |
36634769 |
T |
|
| Q |
301 |
gatctaaatgttacatatgttgatatctttaccataaaattggacctcattgcaaactactcaaaacatggtaagtataactagaaaaatttcattgttg |
400 |
Q |
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| T |
36634770 |
gatctaaatgttacatatgttgatatctttaccataaaattggacctcattgcaaactactcaaaacatggtaagtataactagaaaaatttcattgttg |
36634869 |
T |
|
| Q |
401 |
ct |
402 |
Q |
| |
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|| |
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| T |
36634870 |
ct |
36634871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 53 - 389
Target Start/End: Original strand, 36639287 - 36639626
Alignment:
| Q |
53 |
aaaaattgttttgctgaaattaacattc-actctcttatttgtg--atagagactatatgaccacggggctaggaatttttgggtacataacacaggtcc |
149 |
Q |
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| T |
36639287 |
aaaaatagttatgcagaaattgacattccactctcttatttgtgtgacagagactgtatgacatcggggtcaggaattttcggatacataacgcgagtcc |
36639386 |
T |
|
| Q |
150 |
acttggatgcttgggtcaaaatgttgccacatttggccatgataaatcaaagattgatgaactaggatgtcttggtgcacacaaccaagctgctaaggcc |
249 |
Q |
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| T |
36639387 |
acttggatgcttggctcattttatttccctatttggcactgatccatcgaaacttgatgaactaggatgtcttcgttaacataacttagctgctaaagct |
36639486 |
T |
|
| Q |
250 |
tttaatctacagttgcaagctttgtgggcaaaattgcagggccagtatctagatctaaatgttacatatgttgatatctttaccataaaattggacctca |
349 |
Q |
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| T |
36639487 |
tttaatcaatatcttcaagatttctgcagtaaattgcagggccagtatccagatgtaaatgttacatatgttgatatctttaccataaaattagacctca |
36639586 |
T |
|
| Q |
350 |
ttgcaaactactcaaaacatggtaagtataactagaaaaa |
389 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||| |||| |
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| T |
36639587 |
ttgcaaactactcacaacatggtaagtatatctagcaaaa |
36639626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 94 - 364
Target Start/End: Complemental strand, 46937462 - 46937192
Alignment:
| Q |
94 |
tgatagagactatatgaccacggggctaggaatttttgggtacataacacaggtccacttggatgcttgggtcaaaatgttgccacatttggccatgata |
193 |
Q |
| |
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||||||||||||||||| | |||||||| |||| ||| |||| || |||||||| ||||||||||| | ||| |||||||||| |||||| |||| |
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| T |
46937462 |
tgatagagactatatgatgagggggctagatatttctggatacacaatacaggtcctcttggatgcttagctcagaatgttgccaaatttggaactgatc |
46937363 |
T |
|
| Q |
194 |
aatcaaagattgatgaactaggatgtcttggtgcacacaaccaagctgctaaggcctttaatctacagttgcaagctttgtgggcaaaattgcagggcca |
293 |
Q |
| |
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||||||| ||||||||||||||||| || ||| || |||||||||| ||| ||||||| ||||| | || ||| |||| ||||||||||| || |
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| T |
46937362 |
catcaaagcttgatgaactaggatgtgttagtgggcataaccaagctgttaaaacctttaacctacaacttcatgctctgtgtagtaaattgcagggtca |
46937263 |
T |
|
| Q |
294 |
gtatctagatctaaatgttacatatgttgatatctttaccataaaattggacctcattgcaaactactcaa |
364 |
Q |
| |
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|||| |||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
46937262 |
atatccagattcaaatgtcacatatgttgatatcttcaccataaaatcaaacctcattgcaaactattcaa |
46937192 |
T |
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