View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12931_low_25 (Length: 413)

Name: NF12931_low_25
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12931_low_25
NF12931_low_25
[»] chr4 (30 HSPs)
chr4 (94-354)||(2263826-2264083)
chr4 (1-70)||(24035536-24035605)
chr4 (1-70)||(31430860-31430929)
chr4 (1-70)||(39382354-39382423)
chr4 (1-70)||(49128350-49128419)
chr4 (3-70)||(24247241-24247308)
chr4 (2-46)||(28963241-28963285)
chr4 (2-45)||(51677641-51677684)
chr4 (5-46)||(28963256-28963297)
chr4 (5-46)||(29385444-29385485)
chr4 (1-46)||(38768483-38768528)
chr4 (1-46)||(48407583-48407628)
chr4 (5-46)||(51677629-51677670)
chr4 (6-46)||(22605727-22605767)
chr4 (5-45)||(24035591-24035631)
chr4 (5-45)||(39382409-39382449)
chr4 (5-45)||(49128324-49128364)
chr4 (6-46)||(56561180-56561220)
chr4 (3-70)||(4649886-4649953)
chr4 (4-70)||(54488668-54488734)
chr4 (5-46)||(56561149-56561190)
chr4 (2-46)||(16202501-16202545)
chr4 (1-45)||(24035576-24035620)
chr4 (5-45)||(24247213-24247253)
chr4 (2-46)||(29385429-29385473)
chr4 (1-45)||(31430900-31430944)
chr4 (1-45)||(39382394-39382438)
chr4 (5-45)||(45106440-45106480)
chr4 (1-45)||(49128335-49128379)
chr4 (6-70)||(54683453-54683517)
[»] chr8 (28 HSPs)
chr8 (1-74)||(34773760-34773833)
chr8 (1-73)||(30982542-30982614)
chr8 (1-70)||(194078-194147)
chr8 (1-70)||(308915-308984)
chr8 (1-71)||(30211276-30211346)
chr8 (1-70)||(629406-629475)
chr8 (2-46)||(45275776-45275820)
chr8 (3-70)||(3465397-3465464)
chr8 (5-46)||(45275791-45275832)
chr8 (5-45)||(194052-194092)
chr8 (5-45)||(629380-629420)
chr8 (6-46)||(26575921-26575961)
chr8 (5-45)||(30211250-30211290)
chr8 (5-45)||(30982600-30982640)
chr8 (5-45)||(34773819-34773859)
chr8 (6-46)||(44240789-44240829)
chr8 (2-45)||(26575902-26575945)
chr8 (1-43)||(36820925-36820967)
chr8 (5-43)||(44240773-44240811)
chr8 (2-43)||(11071151-11071192)
chr8 (5-46)||(26575890-26575931)
chr8 (4-69)||(31246273-31246338)
chr8 (4-45)||(36820938-36820979)
chr8 (1-45)||(194063-194107)
chr8 (1-45)||(629391-629435)
chr8 (1-45)||(30211261-30211305)
chr8 (1-45)||(30982585-30982629)
chr8 (1-45)||(34773804-34773848)
[»] chr1 (41 HSPs)
chr1 (1-74)||(51487806-51487879)
chr1 (1-75)||(26999721-26999795)
chr1 (1-70)||(26822029-26822098)
chr1 (1-70)||(36495815-36495884)
chr1 (1-70)||(38627911-38627980)
chr1 (1-70)||(50978261-50978330)
chr1 (1-73)||(5270938-5271010)
chr1 (3-69)||(15353854-15353920)
chr1 (1-71)||(7592655-7592725)
chr1 (21-70)||(38843984-38844033)
chr1 (5-46)||(6706787-6706828)
chr1 (5-45)||(5270996-5271036)
chr1 (6-46)||(27576833-27576873)
chr1 (2-45)||(41512823-41512866)
chr1 (5-46)||(11829678-11829719)
chr1 (5-46)||(24076132-24076173)
chr1 (5-46)||(31099852-31099893)
chr1 (5-46)||(41512811-41512852)
chr1 (1-45)||(5270981-5271025)
chr1 (5-45)||(7592696-7592736)
chr1 (5-45)||(26822003-26822043)
chr1 (5-45)||(26999781-26999821)
chr1 (5-45)||(36495870-36495910)
chr1 (5-45)||(38627885-38627925)
chr1 (2-46)||(50031510-50031554)
chr1 (5-45)||(50978316-50978356)
chr1 (5-45)||(51487865-51487905)
chr1 (2-45)||(6706799-6706842)
chr1 (3-70)||(29441285-29441352)
chr1 (5-43)||(46033131-46033169)
chr1 (5-46)||(7385887-7385928)
chr1 (2-43)||(31099840-31099881)
chr1 (1-46)||(42137057-42137102)
chr1 (2-46)||(7385899-7385943)
chr1 (5-45)||(15353826-15353866)
chr1 (1-45)||(26822014-26822058)
chr1 (1-45)||(26999766-26999810)
chr1 (1-45)||(36495855-36495899)
chr1 (1-45)||(38627896-38627940)
chr1 (1-45)||(50978301-50978345)
chr1 (1-45)||(51487850-51487894)
[»] chr7 (20 HSPs)
chr7 (1-73)||(31011928-31012000)
chr7 (1-70)||(25340912-25340981)
chr7 (5-43)||(12910577-12910615)
chr7 (5-45)||(25340967-25341007)
chr7 (5-45)||(31011986-31012026)
chr7 (3-70)||(39634109-39634176)
chr7 (1-43)||(25472137-25472179)
chr7 (4-42)||(30139210-30139248)
chr7 (4-70)||(42752135-42752201)
chr7 (4-45)||(298047-298088)
chr7 (5-46)||(15000536-15000577)
chr7 (5-46)||(25472164-25472205)
chr7 (5-46)||(37371327-37371368)
chr7 (5-46)||(47157665-47157706)
chr7 (6-46)||(12910593-12910633)
chr7 (2-46)||(25191238-25191282)
chr7 (1-45)||(25340952-25340996)
chr7 (2-46)||(25472149-25472193)
chr7 (1-45)||(31011971-31012015)
chr7 (2-46)||(37371339-37371383)
[»] chr5 (22 HSPs)
chr5 (1-77)||(29541749-29541825)
chr5 (1-70)||(3260272-3260341)
chr5 (1-69)||(33115314-33115382)
chr5 (1-70)||(42664069-42664138)
chr5 (5-70)||(14083160-14083225)
chr5 (6-46)||(2526968-2527008)
chr5 (3-70)||(35847844-35847911)
chr5 (5-46)||(33233108-33233149)
chr5 (5-45)||(3260327-3260367)
chr5 (5-45)||(29541811-29541851)
chr5 (5-45)||(42664043-42664083)
chr5 (5-46)||(4295594-4295635)
chr5 (1-46)||(4295620-4295665)
chr5 (1-30)||(14083171-14083200)
chr5 (5-46)||(27737953-27737994)
chr5 (5-46)||(33082341-33082382)
chr5 (5-46)||(37046226-37046267)
chr5 (1-46)||(37046252-37046297)
chr5 (2-43)||(41741604-41741645)
chr5 (1-45)||(3260312-3260356)
chr5 (1-45)||(29541796-29541840)
chr5 (1-45)||(42664054-42664098)
[»] chr2 (26 HSPs)
chr2 (3-74)||(31787344-31787415)
chr2 (1-71)||(31686254-31686324)
chr2 (1-70)||(40255202-40255271)
chr2 (1-70)||(44282867-44282936)
chr2 (1-70)||(14380799-14380868)
chr2 (6-46)||(13896678-13896718)
chr2 (6-46)||(14037295-14037335)
chr2 (5-46)||(7474196-7474237)
chr2 (5-45)||(14380773-14380813)
chr2 (5-45)||(31686310-31686350)
chr2 (6-46)||(33597568-33597608)
chr2 (5-45)||(40255176-40255216)
chr2 (5-45)||(43695697-43695737)
chr2 (5-45)||(44282841-44282881)
chr2 (5-46)||(13896647-13896688)
chr2 (5-46)||(14037264-14037305)
chr2 (1-46)||(32496565-32496610)
chr2 (2-43)||(32496583-32496624)
chr2 (2-43)||(33597586-33597627)
chr2 (6-43)||(37640139-37640176)
chr2 (1-45)||(14380784-14380828)
chr2 (1-45)||(31686295-31686339)
chr2 (5-45)||(31787316-31787356)
chr2 (1-45)||(40255187-40255231)
chr2 (2-46)||(43341649-43341693)
chr2 (1-45)||(44282852-44282896)
[»] chr3 (30 HSPs)
chr3 (1-71)||(38469875-38469945)
chr3 (1-71)||(47140684-47140754)
chr3 (1-70)||(1528200-1528269)
chr3 (1-70)||(52693234-52693303)
chr3 (3-70)||(47697386-47697453)
chr3 (1-70)||(51124705-51124774)
chr3 (5-45)||(51124760-51124800)
chr3 (5-46)||(42074997-42075038)
chr3 (5-46)||(48253891-48253932)
chr3 (5-45)||(1528174-1528214)
chr3 (5-45)||(38469849-38469889)
chr3 (5-45)||(47140740-47140780)
chr3 (2-46)||(48253876-48253920)
chr3 (1-45)||(51124745-51124789)
chr3 (5-45)||(52693208-52693248)
chr3 (3-70)||(52813292-52813359)
chr3 (1-43)||(11264386-11264428)
chr3 (5-43)||(30811371-30811409)
chr3 (5-43)||(33025181-33025219)
chr3 (3-68)||(45423728-45423793)
chr3 (2-43)||(45488485-45488526)
chr3 (2-43)||(48181740-48181781)
chr3 (1-45)||(1528185-1528229)
chr3 (2-46)||(30811383-30811427)
chr3 (2-42)||(33025167-33025207)
chr3 (1-45)||(38469860-38469904)
chr3 (1-45)||(47140725-47140769)
chr3 (5-45)||(47697358-47697398)
chr3 (5-45)||(51230367-51230407)
chr3 (1-45)||(52693219-52693263)
[»] chr6 (10 HSPs)
chr6 (1-70)||(30019912-30019981)
chr6 (6-46)||(4147494-4147534)
chr6 (3-70)||(15151462-15151529)
chr6 (1-70)||(5584006-5584075)
chr6 (5-45)||(30019886-30019926)
chr6 (6-46)||(31745373-31745413)
chr6 (5-43)||(10683831-10683869)
chr6 (2-43)||(20837891-20837932)
chr6 (5-46)||(20837903-20837944)
chr6 (1-45)||(30019897-30019941)
[»] scaffold0808 (2 HSPs)
scaffold0808 (4-43)||(4771-4810)
scaffold0808 (5-46)||(4757-4798)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-46)||(32428-32473)
[»] scaffold0068 (1 HSPs)
scaffold0068 (5-46)||(38372-38413)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 94 - 354
Target Start/End: Original strand, 2263826 - 2264083
Alignment:
Q  94 ttataattttaggaaagaaattgtctatttactaattttgtgccttaaccaattttactattattgttaaacaagtgtgcattttgtcatatattattca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  2263826 ttataattttaggaaagaaattgtctatttactaattttgtgccttaaccaattttactatt---gttaaacaagtgtgcattttgtcatatattattca 2263922  T
Q  194 ttcaactaagcaataaagatgggtctcttggatcactttgtaaatattaacctaactatacatgaatcacatgcaacaacatcaaaatacttgacaagaa 293  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2263923 ttcaactaagcaataaagatgggtctcttcgatcactttgtaaatattaacctaactatccatgaatcacatgcaacaacatcaaaatacttgacaagaa 2264022  T
Q  294 attcaatagaatcagtacctagaaacactgtacaatattttaatttaagtcaagcaaggca 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2264023 attcaatagaatcagtacctagaaacactgtacaatattttaatttaagtcaagcaaggca 2264083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24035605 - 24035536
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24035605 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 24035536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31430929 - 31430860
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31430929 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 31430860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39382423 - 39382354
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39382423 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 39382354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 49128350 - 49128419
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49128350 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 49128419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 24247241 - 24247308
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24247241 caaaatcaattctttcagaatcaattctgtcagaatcaattctgcacacctcagaaccaaacacacac 24247308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 28963285 - 28963241
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  28963285 tcaaaatcaattctgtcagaatcaattctatcagaatcaattcta 28963241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 51677641 - 51677684
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  51677641 tcaaaatcaattctgtcagaatcaattctatcagaatcaattct 51677684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 28963297 - 28963256
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  28963297 aaatcaattctctcaaaatcaattctgtcagaatcaattcta 28963256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 29385485 - 29385444
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  29385485 aaatcaattctttcaaaatcaattctgtcaaaatcaattcta 29385444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38768483 - 38768528
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||||    
T  38768483 gtcacaatcaattctatcaaaatcaattctgtcagaatcaattcta 38768528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48407583 - 48407628
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||||    
T  48407583 gtcacaatcaattctatcaaaatcaattctgtcagaatcaattcta 48407628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 51677629 - 51677670
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  51677629 aaatcaattctctcaaaatcaattctgtcagaatcaattcta 51677670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 22605767 - 22605727
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  22605767 aatcaattctatcaaaatcaattctgtcagaatcaattcta 22605727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 24035631 - 24035591
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  24035631 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 24035591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 39382449 - 39382409
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  39382449 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 39382409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 49128324 - 49128364
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  49128324 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 49128364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 56561180 - 56561220
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  56561180 aatcaattctatcagaatcaattatgtcagaatcaattcta 56561220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 4649953 - 4649886
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||  ||| | |||||| | ||| |||||||||||| |||| |||||||||||||||||    
T  4649953 caaaatcaattcactcaaactcaattttatcaaaatcaattctactcaccacagaaccaaacacacac 4649886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 54488668 - 54488734
Alignment:
Q  4 aaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||  || |||||||||||||| |||||||| |   |||| |||||||||||||||||    
T  54488668 aaaatcaattctaacaaaatcaattctgtcaaaatcaattatctccaccgcagaaccaaacacacac 54488734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 56561149 - 56561190
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| |||||||||||| |||||||||||||    
T  56561149 aaatcaattctctcataatcaattctgtgagaatcaattcta 56561190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 16202545 - 16202501
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||||| ||| |||||||||  |||||||||||||||    
T  16202545 tcaaaatcaattctatcaaaatcaattcaatcagaatcaattcta 16202501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24035620 - 24035576
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  24035620 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 24035576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 24247213 - 24247253
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| ||||||||||||||| || ||||||||||    
T  24247213 aaatcaattctgtcagaatcaattctgacaaaatcaattct 24247253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 29385473 - 29385429
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||||| ||| |||||||||| | |||||||||||||    
T  29385473 tcaaaatcaattctgtcaaaatcaattctattagaatcaattcta 29385429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31430944 - 31430900
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  31430944 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 31430900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39382438 - 39382394
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  39382438 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 39382394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 45106440 - 45106480
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| ||| |||||||| ||||||||||||||||    
T  45106440 aaatcaattctctcaaaatcaattatgtcagaatcaattct 45106480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49128335 - 49128379
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  49128335 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 49128379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 54683453 - 54683517
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||| |||| |||||||||| ||| |||||||| |   |||| |||||||||||||||||    
T  54683453 aatcaattcattcaaaatcaattctatcaaaatcaatttttttcaccgcagaaccaaacacacac 54683517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34773833 - 34773760
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacatag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34773833 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacatag 34773760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 30982614 - 30982542
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacata 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30982614 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacata 30982542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 194078 - 194147
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  194078 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 194147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 308915 - 308984
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  308915 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 308984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30211276 - 30211346
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacaca 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30211276 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacaccttagaaccaaacacacaca 30211346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 629406 - 629475
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  629406 gtcataatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 629475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 45275820 - 45275776
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||||| |||||||||||||| |||||||||||||||    
T  45275820 tcaaaatcaattctgtcagaatcaattctatcagaatcaattcta 45275776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 3465464 - 3465397
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||  ||| | |||||||| ||| |||||||||||| |||| |||||||||||||||||    
T  3465464 caaaatcaattcactcaaactcaattctatcaaaatcaattctactcaccgcagaaccaaacacacac 3465397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 45275832 - 45275791
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  45275832 aaatcaattctctcaaaatcaattctgtcagaatcaattcta 45275791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 194052 - 194092
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  194052 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 194092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 629380 - 629420
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  629380 aaatcaattctgtcagaatcaattctgtcataatcaattct 629420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 26575921 - 26575961
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  26575921 aatcaattctatcaaaatcaattctgtcagaatcaattcta 26575961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 30211250 - 30211290
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  30211250 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 30211290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 30982640 - 30982600
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  30982640 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 30982600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 34773859 - 34773819
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  34773859 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 34773819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 44240789 - 44240829
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  44240789 aatcaattctatcagaatcaattttgtcagaatcaattcta 44240829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 26575902 - 26575945
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||    
T  26575902 tcaaaatcaattctatcagaatcaattctatcaaaatcaattct 26575945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36820967 - 36820925
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||| ||||| |||| |||||||||||||||||||||||||||    
T  36820967 gtcagaatcagttctatcagaatcaattctgtcagaatcaatt 36820925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 44240773 - 44240811
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  44240773 aaatcaattctctcagaatcaattctatcagaatcaatt 44240811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 11071151 - 11071192
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  11071151 tcaaaatcaattatatcagaatcaattctgccagaatcaatt 11071192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 26575890 - 26575931
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| |||||||||| |||||||||||||||    
T  26575890 aaatcaattctctcaaaatcaattctatcagaatcaattcta 26575931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 31246338 - 31246273
Alignment:
Q  4 aaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacaca 69  Q
    ||||||||||||  || |||||||||||||| |||||||| |   |||| ||||||||||||||||    
T  31246338 aaaatcaattctaacaaaatcaattctgtcaaaatcaattatctccaccgcagaaccaaacacaca 31246273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 36820979 - 36820938
Alignment:
Q  4 aaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||||||||||| ||||||||| |||| ||||||||||||||    
T  36820979 aaaatcaattctgtcagaatcagttctatcagaatcaattct 36820938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 194063 - 194107
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  194063 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 194107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 629391 - 629435
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  629391 gtcagaatcaattctgtcataatcaattctttcagaatcaattct 629435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30211261 - 30211305
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  30211261 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 30211305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30982629 - 30982585
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  30982629 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 30982585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34773848 - 34773804
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  34773848 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 34773804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 51487879 - 51487806
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacatag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51487879 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacatag 51487806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26999795 - 26999721
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacataga 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26999795 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacttaga 26999721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26822029 - 26822098
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26822029 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 26822098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36495884 - 36495815
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36495884 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 36495815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38627911 - 38627980
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627911 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 38627980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 50978330 - 50978261
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50978330 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 50978261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 5271010 - 5270938
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacata 73  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271010 gtcagaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacata 5270938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 15353854 - 15353920
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacaca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353854 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacaca 15353920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7592725 - 7592655
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacaca 71  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7592725 gtcagaatcaattctgtcaaaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacaca 7592655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 38843984 - 38844033
Alignment:
Q  21 aatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843984 aatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 38844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 6706787 - 6706828
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  6706787 aaatcaattctttcaaaatcaattctgtcagaatcaattcta 6706828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 5271036 - 5270996
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  5271036 aaatcaattctgtcagaatcaattctgtcagaatcaattct 5270996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 27576833 - 27576873
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  27576833 aatcaattctatcagaatcaattctgtcagaatcaattcta 27576873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 41512823 - 41512866
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  41512823 tcaaaatcaattctgtcagaatcaattctatcagaatcaattct 41512866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 11829678 - 11829719
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  11829678 aaatcaattctttcaaaatcaattctgacagaatcaattcta 11829719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 24076132 - 24076173
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  24076132 aaatcaattctctcaaaatcaattctgtcagaatcaattcta 24076173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 31099893 - 31099852
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  31099893 aaatcaattctttcaaaatcaattatgtcagaatcaattcta 31099852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 41512811 - 41512852
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  41512811 aaatcaattctctcaaaatcaattctgtcagaatcaattcta 41512852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5271025 - 5270981
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| |||||||||||||| ||||||||||||||    
T  5271025 gtcagaatcaattctgtcagaatcaattctttcagaatcaattct 5270981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 7592736 - 7592696
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  7592736 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 7592696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 26822003 - 26822043
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  26822003 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 26822043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 26999821 - 26999781
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  26999821 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 26999781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 36495910 - 36495870
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  36495910 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 36495870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 38627885 - 38627925
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  38627885 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 38627925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 50031510 - 50031554
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||||| |||||||||||| | |||||||||||||||    
T  50031510 tcaaaatcaattctgtcagaatcaattatatcagaatcaattcta 50031554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 50978356 - 50978316
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  50978356 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 50978316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 51487905 - 51487865
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  51487905 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 51487865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 6706799 - 6706842
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||||||||||||| |||||||||||||| | ||||||||||||    
T  6706799 tcaaaatcaattctgtcagaatcaattctattagaatcaattct 6706842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 29441285 - 29441352
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||  ||| | |||||||| ||| |||||||||||| |||| ||||| |||||||||||    
T  29441285 caaaatcaattcactcaaactcaattctatcaaaatcaattctactcaccgcagaatcaaacacacac 29441352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 46033169 - 46033131
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  46033169 aaatcaattctttcaaaatcaattctatcagaatcaatt 46033131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 7385887 - 7385928
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||    
T  7385887 aaatcaattctctcaaaattaattctgtcagaatcaattcta 7385928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 31099881 - 31099840
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||||||||||| | |||||||||||||| ||||||||||||    
T  31099881 tcaaaatcaattatgtcagaatcaattctatcagaatcaatt 31099840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42137102 - 42137057
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||||||| | |||||||||||| ||| |||||||||||    
T  42137102 gtcaaaatcaattctataagaatcaattctatcataatcaattcta 42137057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 7385899 - 7385943
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||| |||||| ||||||||||||||  ||||||||||||||    
T  7385899 tcaaaattaattctgtcagaatcaattctaacagaatcaattcta 7385943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 15353826 - 15353866
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| ||||||||||||||| || ||||||||||    
T  15353826 aaatcaattctgtcagaatcaattctgccaaaatcaattct 15353866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26822014 - 26822058
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  26822014 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 26822058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26999810 - 26999766
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  26999810 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 26999766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36495899 - 36495855
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  36495899 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 36495855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38627896 - 38627940
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  38627896 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 38627940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 50978345 - 50978301
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  50978345 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 50978301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51487894 - 51487850
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  51487894 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 51487850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 31012000 - 31011928
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacata 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012000 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacata 31011928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25340981 - 25340912
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25340981 gtcaaaatcaattctttcagaatcaattctgtcagaattaattctacacacctcagaaccaaacacacac 25340912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 12910577 - 12910615
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  12910577 aaatcaattctctcagaatcaattctgtcagaatcaatt 12910615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 25341007 - 25340967
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  25341007 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 25340967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 31012026 - 31011986
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  31012026 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 31011986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 39634176 - 39634109
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    |||||||||||||  || |||||||||||||  ||||||||||   |||| |||||||||||||||||    
T  39634176 caaaatcaattctaacaaaatcaattctgtccaaatcaattctctccaccgcagaaccaaacacacac 39634109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25472179 - 25472137
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||    
T  25472179 gtcaaaatcaattctatcaaaatcaattctatcagaatcaatt 25472137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 30139248 - 30139210
Alignment:
Q  4 aaaatcaattctttcagaatcaattctgtcagaatcaat 42  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  30139248 aaaatcaattctgtcagaatcaattctatcagaatcaat 30139210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 42752201 - 42752135
Alignment:
Q  4 aaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||  || |||||||||||||| |||||||| |   |||| |||||||||||||||||    
T  42752201 aaaatcaattctaacaaaatcaattctgtcaaaatcaattatctccaccgcagaaccaaacacacac 42752135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 298088 - 298047
Alignment:
Q  4 aaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||||||||||| |||||||||||||| ||| ||||||||||    
T  298088 aaaatcaattctgtcagaatcaattctatcataatcaattct 298047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 15000536 - 15000577
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||| | ||| ||||||||||||||||||||||||||    
T  15000536 aaatcaattatctcaaaatcaattctgtcagaatcaattcta 15000577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 25472205 - 25472164
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| |||||||||||||| |||||||||||    
T  25472205 aaatcaattctctcaaaatcaattctgtcaaaatcaattcta 25472164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 37371327 - 37371368
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||    
T  37371327 aaatcaattctctcaaaatcaattccgtcagaatcaattcta 37371368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 47157706 - 47157665
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||  |||||||||||||| |||||||||||||||    
T  47157706 aaatcaattccgtcagaatcaattctctcagaatcaattcta 47157665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 12910593 - 12910633
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| |||||||||||| | |||||||||||||||    
T  12910593 aatcaattctgtcagaatcaattatatcagaatcaattcta 12910633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 25191282 - 25191238
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||| | ||| |||||||||| |||||||||||||||    
T  25191282 tcaaaatcaattatatcaaaatcaattctttcagaatcaattcta 25191238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25340996 - 25340952
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  25340996 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 25340952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 25472193 - 25472149
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||||| ||| |||||||||| ||| |||||||||||    
T  25472193 tcaaaatcaattctgtcaaaatcaattctatcaaaatcaattcta 25472149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31012015 - 31011971
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  31012015 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 31011971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 37371339 - 37371383
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||||  |||||||||||||| ||| |||||||||||    
T  37371339 tcaaaatcaattccgtcagaatcaattctatcaaaatcaattcta 37371383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29541825 - 29541749
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacatagaga 77  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29541825 gtcaaaatcaattctttcagaatcaattctgtcagaattaattctacacacctcagaaccaaacacacacatagaga 29541749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3260341 - 3260272
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260341 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 3260272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33115314 - 33115382
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacaca 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33115314 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacaca 33115382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 42664069 - 42664138
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42664069 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaagacacac 42664138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 14083160 - 14083225
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14083160 aaatcaattctgtcaaaatcaattctttcagaatcaattctacacacctcagaaccaaacacacac 14083225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 2526968 - 2527008
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  2526968 aatcaattctatcagaatcaattctgtcagaatcaattcta 2527008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 35847911 - 35847844
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||  ||| | |||||||| ||| |||||||||||| |||| |||||||||||||||||    
T  35847911 caaaatcaattcactcaaactcaattctatcaaaatcaattctactcaccgcagaaccaaacacacac 35847844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 33233108 - 33233149
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  33233108 aaatcaattctctcataatcaattctgtcagaatcaattcta 33233149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 3260367 - 3260327
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  3260367 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 3260327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 29541851 - 29541811
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  29541851 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 29541811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 42664043 - 42664083
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  42664043 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 42664083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 4295594 - 4295635
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| |||||||| |||||||||||||||||    
T  4295594 aaatcaattctctcaaaatcaattatgtcagaatcaattcta 4295635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4295620 - 4295665
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||| |||||||||| ||| |||||||||||||| |||||||||||    
T  4295620 gtcagaatcaattctatcaaaatcaattctgtcaaaatcaattcta 4295665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 14083171 - 14083200
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattct 30  Q
    ||||||||||||||||||||||||||||||    
T  14083171 gtcaaaatcaattctttcagaatcaattct 14083200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 27737994 - 27737953
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||||||| |||||| |||||||||||||||    
T  27737994 aaatcaattctgtcagaattaattctatcagaatcaattcta 27737953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 33082382 - 33082341
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| |||||||||| |||||||||||||||    
T  33082382 aaatcaattctctcaaaatcaattctatcagaatcaattcta 33082341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 37046226 - 37046267
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| | | ||||||||||||||||||||||||||    
T  37046226 aaatcaattctcttaaaatcaattctgtcagaatcaattcta 37046267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37046252 - 37046297
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||| ||||||||||  ||||||||||| |||||||||||||||||    
T  37046252 gtcagaatcaattctaacagaatcaattatgtcagaatcaattcta 37046297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 41741645 - 41741604
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||||||||||||| ||| |||||||||| ||||||||||||    
T  41741645 tcaaaatcaattctatcaaaatcaattctatcagaatcaatt 41741604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3260356 - 3260312
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  3260356 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 3260312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29541840 - 29541796
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  29541840 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 29541796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42664054 - 42664098
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  42664054 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 42664098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 31787344 - 31787415
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacatag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31787344 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacacatag 31787415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31686324 - 31686254
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacaca 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686324 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacaca 31686254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 40255202 - 40255271
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40255202 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 40255271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44282867 - 44282936
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282867 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 44282936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14380799 - 14380868
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14380799 gtcaaaatcaattctttcagaatcaattctgtcagaataaattctacacacctcagaaccaaacacacac 14380868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 13896678 - 13896718
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  13896678 aatcaattctatcagaatcaattctgtcagaatcaattcta 13896718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 14037295 - 14037335
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  14037295 aatcaattctatcagaatcaattctgtcagaatcaattcta 14037335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 7474196 - 7474237
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  7474196 aaatcaattctctcaaaatcaattctgtcagaatcaattcta 7474237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 14380773 - 14380813
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  14380773 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 14380813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 31686350 - 31686310
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  31686350 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 31686310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 33597608 - 33597568
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  33597608 aatcaattctatcagaatcaattttgtcagaatcaattcta 33597568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 40255176 - 40255216
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  40255176 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 40255216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 43695697 - 43695737
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  43695697 aaatcaattctttcaaaatcaattatgtcagaatcaattct 43695737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 44282841 - 44282881
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  44282841 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 44282881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 13896647 - 13896688
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||||||| |||||||| |||||||||||||    
T  13896647 aaatcaattctctcagaataaattctgttagaatcaattcta 13896688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 14037264 - 14037305
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||||||| |||||||| |||||||||||||    
T  14037264 aaatcaattctctcagaataaattctgttagaatcaattcta 14037305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32496610 - 32496565
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||| |||||||||| |||||||||||| | |||||||||||||||    
T  32496610 gtcataatcaattctatcagaatcaattatctcagaatcaattcta 32496565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 32496624 - 32496583
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||||||||||||| ||| |||||||||| ||||||||||||    
T  32496624 tcaaaatcaattctgtcataatcaattctatcagaatcaatt 32496583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 33597627 - 33597586
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    ||||||||||||||  ||||||||||||| ||||||||||||    
T  33597627 tcaaaatcaattctaccagaatcaattctatcagaatcaatt 33597586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 37640176 - 37640139
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  37640176 aatcaattctatcagaatcaatactgtcagaatcaatt 37640139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14380784 - 14380828
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  14380784 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 14380828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31686339 - 31686295
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  31686339 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 31686295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 31787316 - 31787356
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| ||||||||||||||| || ||||||||||    
T  31787316 aaatcaattctgtcagaatcaattctgccaaaatcaattct 31787356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40255187 - 40255231
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  40255187 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 40255231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 43341693 - 43341649
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||| | |||||||||||| | |||||||||||||||    
T  43341693 tcaaaatcaattatgtcagaatcaattttatcagaatcaattcta 43341649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44282852 - 44282896
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  44282852 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 44282896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 38469875 - 38469945
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacaca 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38469875 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacaca 38469945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47140754 - 47140684
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacaca 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47140754 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacaca 47140684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1528200 - 1528269
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1528200 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 1528269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 52693234 - 52693303
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52693234 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 52693303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 47697386 - 47697453
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47697386 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 47697453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 51124774 - 51124705
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51124774 gtcagaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 51124705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 51124800 - 51124760
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  51124800 aaatcaattctgtcagaatcaattctgtcagaatcaattct 51124760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 42074997 - 42075038
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  42074997 aaatcaattctctcaaaatcaattctgtcagaatcaattcta 42075038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 48253932 - 48253891
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  48253932 aaatcaattctctcaaaatcaattctgtcagaatcaattcta 48253891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 1528174 - 1528214
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  1528174 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 1528214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 38469849 - 38469889
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  38469849 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 38469889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 47140780 - 47140740
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  47140780 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 47140740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 48253920 - 48253876
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||    
T  48253920 tcaaaatcaattctgtcagaatcaattctatcaaaatcaattcta 48253876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51124789 - 51124745
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| |||||||||||||| ||||||||||||||    
T  51124789 gtcagaatcaattctgtcagaatcaattctttcagaatcaattct 51124745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 52693208 - 52693248
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  52693208 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 52693248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 52813292 - 52813359
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||  ||| | |||||||| ||| |||||||| ||| |||| |||||||||||||||||    
T  52813292 caaaatcaattcactcaaactcaattctatcaaaatcaattttactcaccgcagaaccaaacacacac 52813359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11264386 - 11264428
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||| |||||||||| |||||||||| ||||||||||||||||    
T  11264386 gtcacaatcaattctatcagaatcaactctgtcagaatcaatt 11264428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 30811371 - 30811409
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  30811371 aaatcaattctctcaaaatcaattctgtcagaatcaatt 30811409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 33025219 - 33025181
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  33025219 aaatcaattctctcaaaatcaattctgtcagaatcaatt 33025181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 45423793 - 45423728
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacac 68  Q
    ||||||||||||| |||||||||||| || || |||||||| |   |||| |||||||||||||||    
T  45423793 caaaatcaattctatcagaatcaattatgccaaaatcaattttcgccaccacagaaccaaacacac 45423728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 45488526 - 45488485
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||||||||||||||||| |||||||||| ||| ||||||||    
T  45488526 tcaaaatcaattctttcaaaatcaattctatcataatcaatt 45488485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 48181740 - 48181781
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||||||||||||| |||||||||||| ||||| ||||||||    
T  48181740 tcaaaatcaattctatcagaatcaattatgtcaaaatcaatt 48181781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1528185 - 1528229
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  1528185 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 1528229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 30811383 - 30811427
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||||||| |||||||||||| | ||| |||||||||||    
T  30811383 tcaaaatcaattctgtcagaatcaattatatcataatcaattcta 30811427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 33025207 - 33025167
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaat 42  Q
    |||||||||||||| |||||||||||| | |||||||||||    
T  33025207 tcaaaatcaattctgtcagaatcaattatatcagaatcaat 33025167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38469860 - 38469904
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  38469860 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 38469904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47140769 - 47140725
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  47140769 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 47140725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 47697358 - 47697398
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| ||||||||||||||| || ||||||||||    
T  47697358 aaatcaattctgtcagaatcaattctgccaaaatcaattct 47697398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 51230367 - 51230407
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||| || |||||||||||    
T  51230367 aaatcaattctctcagaatcaattctctcggaatcaattct 51230407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 52693219 - 52693263
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  52693219 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 52693263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30019912 - 30019981
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30019912 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 30019981  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 4147494 - 4147534
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  4147494 aatcaattctatcagaatcaattctgtcagaatcaattcta 4147534  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 15151529 - 15151462
Alignment:
Q  3 caaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||  ||| | |||||||| ||| |||||||||||| |||| |||||||||||||||||    
T  15151529 caaaatcaattcactcaaactcaattctatcaaaatcaattctactcaccgcagaaccaaacacacac 15151462  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5584075 - 5584006
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattctacacacctcagaaccaaacacacac 70  Q
    ||||||||||||||| ||| |||||||||| ||| ||||||||||   |||| ||||||| |||||||||    
T  5584075 gtcaaaatcaattctgtcaaaatcaattctatcaaaatcaattctcgtcaccgcagaacctaacacacac 5584006  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 30019886 - 30019926
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  30019886 aaatcaattctgtcagaatcaattctgtcaaaatcaattct 30019926  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 31745413 - 31745373
Alignment:
Q  6 aatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  31745413 aatcaattctatcataatcaattctgtcagaatcaattcta 31745373  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 10683831 - 10683869
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  10683831 aaatcaattctctcaaaatcaattctgtcagaatcaatt 10683869  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 20837932 - 20837891
Alignment:
Q  2 tcaaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||||||||||||| | |||||||||||| ||||||||||||    
T  20837932 tcaaaatcaattctgtaagaatcaattctatcagaatcaatt 20837891  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 20837944 - 20837903
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||| ||||| |||||||||||| |||||||||||||    
T  20837944 aaatcaattttttcaaaatcaattctgtaagaatcaattcta 20837903  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30019897 - 30019941
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattct 45  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  30019897 gtcagaatcaattctgtcaaaatcaattctttcagaatcaattct 30019941  T

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Target: scaffold0808 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 4771 - 4810
Alignment:
Q  4 aaaatcaattctttcagaatcaattctgtcagaatcaatt 43  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  4771 aaaatcaattctgtcagaatcaattctatcagaatcaatt 4810  T

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Target: scaffold0808; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 4757 - 4798
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| | | ||||||||||||||||||||||||||    
T  4757 aaatcaattctgttaaaatcaattctgtcagaatcaattcta 4798  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32473 - 32428
Alignment:
Q  1 gtcaaaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    |||| |||||||||| ||| ||||||||| ||||||||||||||||    
T  32473 gtcacaatcaattctatcataatcaattcagtcagaatcaattcta 32428  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 38372 - 38413
Alignment:
Q  5 aaatcaattctttcagaatcaattctgtcagaatcaattcta 46  Q
    ||||||||||| ||| |||||||||||||| |||||||||||    
T  38372 aaatcaattctctcaaaatcaattctgtcaaaatcaattcta 38413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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