View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_26 (Length: 412)
Name: NF12931_low_26
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 32823459 - 32823705
Alignment:
| Q |
8 |
atacattgttaagttgtaatttaatattttgaccaagtgacat----gagtgctatactattgatacctacatcaggcgtgacataattgataatgataa |
103 |
Q |
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| T |
32823459 |
atacattgttaagttgtaatttaatattttgaccaagtcacatatatgagtgctatactattgatacctacatcaggcgtgacataattgataatgataa |
32823558 |
T |
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| Q |
104 |
gtacttagacaattcatgtgcttgattcctaactgctgtgctgtggaatgaagcttattgaaagatattaaccccttaaatgaatcctttgatggattgt |
203 |
Q |
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| T |
32823559 |
gtacttagagaattcatgtgcttgattcctaactgttgtgctgtggaatgaaacttatcgaaagatattaaccccttaaatgaatcctttgatggattgt |
32823658 |
T |
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| Q |
204 |
cctgttaagcattctaaaactagtaattctaaaattagtaattattc |
250 |
Q |
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| T |
32823659 |
cctgttaagcattctaagattagtaattctaacattaataattattc |
32823705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 32823779 - 32823851
Alignment:
| Q |
324 |
gtgcttaaagagtgctccggaggcacttgttaatatttctctttatatattaaagtaaaatttatgaactaat |
396 |
Q |
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| T |
32823779 |
gtgcttaaagagtgctccggaggcactcgttaacatttccctttatatattaaagtaaaatttatgaactaat |
32823851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 28770579 - 28770624
Alignment:
| Q |
324 |
gtgcttaaagagtgctccggaggcacttgttaatatttctctttat |
369 |
Q |
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| T |
28770579 |
gtgcttaaagagtgttccggaggcactcgttaacatttccctttat |
28770624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 46087197 - 46087237
Alignment:
| Q |
324 |
gtgcttaaagagtgctccggaggcacttgttaatatttctc |
364 |
Q |
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| T |
46087197 |
gtgcttaaagagtgctccgggagcacttgttaacatttctc |
46087237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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