View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_29 (Length: 361)
Name: NF12931_low_29
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 176 - 348
Target Start/End: Original strand, 28813117 - 28813288
Alignment:
| Q |
176 |
tgctggacaatcaattattgctagcaattttatcacaaatttgtgacaataaatgattgcaagtgggatttatcaggaaaccaaacatgttcttcctcta |
275 |
Q |
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| T |
28813117 |
tgctggacaatcaattattgctagcaattttatcacaaatttgtgacaataaatgattgcaagtgggatttatcaggaaaccaaacatgttcttcctcta |
28813216 |
T |
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| Q |
276 |
atccnnnnnnnnnnnnnnncacgttcttcctttgatctgtttcaattttagtttgttaattagttcaatgatg |
348 |
Q |
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| T |
28813217 |
atcc-aaaaaaaaaaaaaacacgttcttcctttgatctgtttcaattttagtttgttaattagttcaatgatg |
28813288 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 28812981 - 28813040
Alignment:
| Q |
40 |
taactcacactagttcattcttgacaggcgcatgctttttcatagtgagtcaatttccat |
99 |
Q |
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| T |
28812981 |
taactcacgctaattcattcttgacagccgcatgctttttcatagtgagtcaatttccat |
28813040 |
T |
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