View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12931_low_3 (Length: 805)
Name: NF12931_low_3
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 282 - 779
Target Start/End: Complemental strand, 38014777 - 38014277
Alignment:
| Q |
282 |
attctcttaaaagtgcataccctatgcatggacactttggttcagtgttcatttcatctactcatacttaatatacatcaaacctgcttgcttccctgtt |
381 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38014777 |
attctcttaaaagtgcataccctatggttagacactttggttcagtgttcattttatctactcatacttaatatacgtcaaacctgcttgcttccctgtt |
38014678 |
T |
|
| Q |
382 |
tatgtttttatttgctttgtttgcagcttgagaaaggagagaatttcgttgatgtgcttaacccttgcacaaaaaaggagactctagcatatggagactc |
481 |
Q |
| |
|
|| |||| |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38014677 |
taagtttatatttgctttgtttgcagcttgaggaaggagaggatttcactgatgtgcttaacccttgcacaaaaaaggagactctagcatatggagactc |
38014578 |
T |
|
| Q |
482 |
caatatgcaaaatcttaagcgtggagaagtattacagctggagagaaagggatatttcaggtgtgatgtacccttcgtctggccttcggaaccaaccgtg |
581 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
38014577 |
caatatgcgaaatcttaagcgtggagaagtattgcagctggagagaaagggatattttaggtgtgatgtacccttcgtccggccttcgaaaccaatcgtg |
38014478 |
T |
|
| Q |
582 |
ttatttgcaatcccagatggcaggcagcagacatctttgaagtaaaaaac---ttttgnnnnnnnaatgacaagttggtaatttggatagctttgtggaa |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38014477 |
ttatttgcaatcccagatggcaggcagcagacatctttgaagtaaaaatcttttttttgtttttgaatgacaggttggtaatttggatagctttgtggaa |
38014378 |
T |
|
| Q |
679 |
ttattttaatgtgtaccagcactactgtgttatgcttataagcaaccttgtatttgggttgtcgactagcaatttgaatatattctctgttttttgtgga |
778 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38014377 |
gtattttaatgtgtaccatcacttcagtgttatgcttataagcaaccttgtatttgggttctcgactagcaatttgaatatattctctgtattttgtgga |
38014278 |
T |
|
| Q |
779 |
c |
779 |
Q |
| |
|
| |
|
|
| T |
38014277 |
c |
38014277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 27 - 310
Target Start/End: Complemental strand, 38015137 - 38014849
Alignment:
| Q |
27 |
acactaccatcactcccttggcccccacctctctatttctatcaatcatatcacccaccaataagccttggctttaatttgagagagagaaatgacactt |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38015137 |
acactaccatcactcccttggcccccacct------ttctatcaatcatatcacccaccaataagccttggctttaatttgagagagaaaaatgacactt |
38015044 |
T |
|
| Q |
127 |
tggtctaagtggatatttgtttatactgcaaggtgtttatgcaattgtgcatcttaccatatatgttataagaatttgttaacgactattatctgacctt |
226 |
Q |
| |
|
||||| | |||||||||||||||||||| ||||||||||||||||| |||||| | ||||| ||||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
38015043 |
tggtccacgtggatatttgtttatactgtaaggtgtttatgcaattctgcatc-tcccataaatgttataagaatttattaacggctattgtctgacctt |
38014945 |
T |
|
| Q |
227 |
tcatgaaccttccatggatctagttttatagcacc------------atattgtccatcctgatcccattctcttaaaagtgcataccctatgcat |
310 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38014944 |
tcatgaaccttccatggaactagttttatagcacctaattgtccttattactgtccatcctgatcccattctcttaaaagtggataccctatgcat |
38014849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University