View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_30 (Length: 360)
Name: NF12931_low_30
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 36647564 - 36647831
Alignment:
| Q |
1 |
tataatagaagcatggagtttatacatgtaacatggcttaaggttaacaaataaactccaaa-tgtcaggcaatt-------------aagaaagtgtta |
86 |
Q |
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| T |
36647564 |
tataatagaagcatggagtttatacatgtaacatggcttaaggttaacaaataaactacaaaatgtcatgcaattgatagcctctattaagaaagtgtta |
36647663 |
T |
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| Q |
87 |
tactcaacaaatatttgatgaacattctttattattagactatgttttctacttacagtaatttgtttctttttcttgttttgattattgagtaagtgtt |
186 |
Q |
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| T |
36647664 |
tactcaacaaatatttgatgaacattctttattattagactatgttttctacttacggtaatttgtttctttttcttgttttgattattgagtaagtgtt |
36647763 |
T |
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| Q |
187 |
ttatataggtgatgtttatgagatgggttgatatgaatttgggattaaactaaacttgaatcgatcat |
254 |
Q |
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| T |
36647764 |
ttatataggggatgtttatgagatgggttgatatgaatttgggattaaactaaacttgaatcgatcat |
36647831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 36648339 - 36648444
Alignment:
| Q |
151 |
gtttctttttcttgttttgattattgagtaagtgtttt--atataggtgatgtttatgagatgggttgatatgaatttgggattaaactaaacttgaatc |
248 |
Q |
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| T |
36648339 |
gtttctttttcgtgttttaattattgagcaagtgtttttaatacaggggatgtttatgagatgggttgatatgaatttgggataaaacataacatgaatc |
36648438 |
T |
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| Q |
249 |
gatcat |
254 |
Q |
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||||| |
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| T |
36648439 |
aatcat |
36648444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 36647883 - 36647919
Alignment:
| Q |
306 |
tgaatctttatctttattataaacatttgtcttcctt |
342 |
Q |
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| T |
36647883 |
tgaatctttatctttattataaatatttgttttcctt |
36647919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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