View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12931_low_32 (Length: 346)
Name: NF12931_low_32
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 8537150 - 8537476
Alignment:
| Q |
16 |
caaagaactaacattcatatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtct |
115 |
Q |
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| T |
8537150 |
caaagaactaacattcgtatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtct |
8537249 |
T |
|
| Q |
116 |
tctgctttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537250 |
tctgctttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccag |
8537349 |
T |
|
| Q |
216 |
aggtttcatcctcacaagagacgttcaaaattccatcagcatctattgtaaagcatactttgtgaggaaggcctcgaggtgcacgaggaactgagagatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537350 |
aggtttcatcctcacaagagacgttcaaaattccatcagcatctattgtaaagcatactttgtgaggaaggcctcgaggtgcacgaggaactgagagatt |
8537449 |
T |
|
| Q |
316 |
nnnnnnncccaacaagttcttctcact |
342 |
Q |
| |
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||||||||||| |||||||| |
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| T |
8537450 |
aaaaaaacccaacaagttgttctcact |
8537476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 56 - 297
Target Start/End: Original strand, 8569465 - 8569706
Alignment:
| Q |
56 |
ttgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctcagcttcttgaattattctcttaa |
155 |
Q |
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||||| ||||| ||||||||||||||| |||| ||| |||||| |||||||| ||||||| || ||||||||||||||||| || || ||||||| || |
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| T |
8569465 |
ttgtaaagataatcatccaaagcatttcttgcttcaactttctttttgaacttcatgtcttgagccttgaaattctcagcttcctggatcattctctcaa |
8569564 |
T |
|
| Q |
156 |
tttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggtttcatcctcacaagagacgttcaaaattccatcagc |
255 |
Q |
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| T |
8569565 |
tttgtccccttgataatcttcccttctcattagttattgtaatttcatttttattgccactggtttcttccactgcagagacgttcaaaattccatcagc |
8569664 |
T |
|
| Q |
256 |
atctattgtaaagcatactttgtgaggaaggcctcgaggtgc |
297 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||| |
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| T |
8569665 |
atctattgtaaagcatactttgtgaggatgacctcgaggtgc |
8569706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 8383911 - 8383730
Alignment:
| Q |
38 |
ttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctcagctt |
137 |
Q |
| |
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||||| |||||| ||| ||||| ||||| || ||||||||||| ||||| | | ||||||| | ||||| |||||||| || ||||||||||| || | |
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| T |
8383911 |
ttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcatgtcttcagccttgaaattctctgcct |
8383812 |
T |
|
| Q |
138 |
cttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggt |
219 |
Q |
| |
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|||| || ||||||| |||||||||||||||||| |||||| ||||||| |||| |||||||||| |||||||||| |||| |
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| T |
8383811 |
cttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatcttgcttattcccacaggt |
8383730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 275
Target Start/End: Original strand, 8609049 - 8609290
Alignment:
| Q |
34 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
133 |
Q |
| |
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||||||||| |||||| || ||||| || || ||||||||| |||| ||||| | | |||||| || ||||| | |||||| |||||||||||||| |
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| T |
8609049 |
atccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctca |
8609148 |
T |
|
| Q |
134 |
gcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggtttcatcctcacaag |
233 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||| | || ||| |||| || ||||| ||||||||||||||||| ||| |||||| ||||| || |
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| T |
8609149 |
gcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattaccactggtttcttcctctgcag |
8609248 |
T |
|
| Q |
234 |
agacgttcaaaattccatcagcatctattgtaaagcatactt |
275 |
Q |
| |
|
|||| || || || |||||||||||||| | ||||||||||| |
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| T |
8609249 |
agacatttaatataccatcagcatctatagcaaagcatactt |
8609290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 219
Target Start/End: Original strand, 8601103 - 8601288
Alignment:
| Q |
34 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
133 |
Q |
| |
|
||||||||| ||||| ||| | |||| ||||| ||||||| | |||| ||||| | | ||||||||||||||| |||||||| |||||||||||||| |
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| T |
8601103 |
atccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatctttgaaattctca |
8601202 |
T |
|
| Q |
134 |
gcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggt |
219 |
Q |
| |
|
|||||||| || ||||||| |||||| || ||||||| |||||| ||||||| ||||| ||||| |||| | |||||||| |||| |
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| T |
8601203 |
gcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttcttgcctattcccacaggt |
8601288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 305
Target Start/End: Complemental strand, 29582792 - 29582609
Alignment:
| Q |
122 |
ttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggttt |
221 |
Q |
| |
|
||||||||||| |||||||| || ||||||| |||||| |||||||| ||||||||| || |||| ||||| ||||| ||||| ||||| |||| ||||| |
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| T |
29582792 |
ttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggttt |
29582693 |
T |
|
| Q |
222 |
catcctcacaagagacgttcaaaattccatcagcatctattgtaaagcatactttgtgaggaaggcctcgaggtgcacgaggaa |
305 |
Q |
| |
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| |||||| || ||| || | || ||||| |||||||| | ||||||||||||| | ||||||| ||||| |||||||||| |
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| T |
29582692 |
cttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgaggaa |
29582609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 8544765 - 8544939
Alignment:
| Q |
34 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
133 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||| | |||||||||||| |||| ||| ||| || ||||||| ||||||| || |||||||| ||| |
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| T |
8544765 |
atccttcattactttcctcacattgtaaagataatactccaaagcatttcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtca |
8544864 |
T |
|
| Q |
134 |
gcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttctta |
208 |
Q |
| |
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| T |
8544865 |
gcttcctggatcattctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcattctta |
8544939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 300
Target Start/End: Original strand, 8589846 - 8590036
Alignment:
| Q |
110 |
atgtcttctgctttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttat |
209 |
Q |
| |
|
|||||||| || ||||| | ||||||||| || || ||||||| |||||| || ||| | ||||||| ||||||| ||||| ||||||| ||| |||| |
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| T |
8589846 |
atgtcttcagccttgaagtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttccattttcattggttattgtaatattttttttat |
8589945 |
T |
|
| Q |
210 |
tcccagaggtttcatcctcacaagagacgttcaaaattccatcagcatctattgtaaagcatactttgtgaggaaggcctcgaggtgcacg |
300 |
Q |
| |
|
| ||| | |||| |||||| ||| ||||| || || |||||||||||||| | ||||||||| | | |||||| || ||||||||||| |
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| T |
8589946 |
taccactgctttcttcctcagcagacacgtttaatataccatcagcatctatagaaaagcatacctggataggaagcccacgaggtgcacg |
8590036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 8580828 - 8581003
Alignment:
| Q |
33 |
tatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctc |
132 |
Q |
| |
|
|||||| ||| |||||| |||| ||||| ||||| || ||||||||||||||||| | | |||||||||||||| ||||||| || || ||| | || |
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| T |
8580828 |
tatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttgaactccatgtcttgagccttaaaaatttc |
8580927 |
T |
|
| Q |
133 |
agcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttctta |
208 |
Q |
| |
|
||||| | ||| ||| ||| |||||| || |||| | ||||||| ||||||| ||||| |||||| | |||||| |
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|
| T |
8580928 |
agcttgtaaaatcattttctcaatttcctctcttgaaagtcttccattttcattcgttattgtaatagccttctta |
8581003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 8575431 - 8575548
Alignment:
| Q |
34 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
133 |
Q |
| |
|
||||||||| | |||| || |||||| ||||| || ||||| ||||||||||| | |||||||||||||| ||||||| || |||||| | ||| |
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|
| T |
8575431 |
atccttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgctgtaactttcttcttgaactccatgtcttgagccttgaaaatttca |
8575530 |
T |
|
| Q |
134 |
gcttcttgaattattctc |
151 |
Q |
| |
|
||||||||||| |||||| |
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| T |
8575531 |
gcttcttgaatcattctc |
8575548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 309
Target Start/End: Original strand, 12527635 - 12527911
Alignment:
| Q |
33 |
tatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctc |
132 |
Q |
| |
|
|||||||||| | |||| |||||| ||| |||||||||||||||||||| ||||| | | |||||| |||||||| || ||||| || ||||||||||| |
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| T |
12527635 |
tatccttcatgattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctc |
12527734 |
T |
|
| Q |
133 |
agcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggtttcatcctcacaa |
232 |
Q |
| |
|
|||||| || || |||||| |||||| ||| |||||||||||||| ||||||| ||||| ||||||||||||||||| ||| ||||| |||| | |
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| T |
12527735 |
agcttcctggatcattctcccaatttcttcacttgataatcttccattttcatttgttattgtaatatctttcttattaccactggttttttccttcgca |
12527834 |
T |
|
| Q |
233 |
gagacgttcaaaattccatcagcatctattgtaaagcatactttgtgaggaaggcctcgaggtgcacgaggaactga |
309 |
Q |
| |
|
||||| || || || || ||||||||||| | ||||||||||| | ||||||| ||||||||| |||||||||| |
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|
| T |
12527835 |
gagacttttaatataccgtcagcatctatagcaaagcatacttggacaggaaggtaacgaggtgcatgaggaactga |
12527911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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