View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_34 (Length: 332)
Name: NF12931_low_34
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_34 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 46864675 - 46864351
Alignment:
| Q |
6 |
acgatgaccaactgaaatccgtcatataaacatagcagctgtcacaaaatttcctatatcaatgttctgctaccacagaaatttgaacacagataaagta |
105 |
Q |
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| T |
46864675 |
acgatgaccaactgaaatccgtcatataaacatagcagctgtca--aaatttcctatatcaatgttctgctaccacagaaatttgaacacagataaagta |
46864578 |
T |
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| Q |
106 |
atcactaatcatacagacaagtggtaaattaattttaaaccagtgttaacgatgatggatggtggaaaaccaaatgtgcaatttaaagccaccataaaac |
205 |
Q |
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| T |
46864577 |
atcactaatcatacagacaagtggtaaattaattttaaaccagtgttaacgatgatggatggtggaaaaccaaatgtgcaatttaaagccaccataaaac |
46864478 |
T |
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| Q |
206 |
accatggcgtcgccatccttcacaaattggccatggcacttgctacaaatctgccatttgacctctgatatttgacaacactgttttaaactgaagcagc |
305 |
Q |
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| T |
46864477 |
accatggcgtcgccatccttcacaaattggccatggcgcttgctacaaatctgccatttgaacgctgatatttgacaacactgttttaaactgaagcagc |
46864378 |
T |
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| Q |
306 |
atttattgtatgaacaaaataacaaaa |
332 |
Q |
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| T |
46864377 |
atttattgtatgaacaaaataacaaaa |
46864351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 32255347 - 32255305
Alignment:
| Q |
201 |
aaaacaccatggcgtcgccatccttcacaaattggccatggca |
243 |
Q |
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| T |
32255347 |
aaaacaccatggcgtcgctatctatcacaaattggccatggca |
32255305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 40416724 - 40416761
Alignment:
| Q |
194 |
ccaccataaaacaccatggcgtcgccatccttcacaaa |
231 |
Q |
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| T |
40416724 |
ccaccataaaacgccatgtcgtcgccatccttcacaaa |
40416761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 30750090 - 30750042
Alignment:
| Q |
194 |
ccaccataaaacaccatggcgtcgccatccttcacaaattggccatggc |
242 |
Q |
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| T |
30750090 |
ccaccatagaacaccatggcaccgccatctttcacaaattggccgtggc |
30750042 |
T |
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