View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_39 (Length: 313)
Name: NF12931_low_39
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 15517460 - 15517746
Alignment:
| Q |
18 |
aaaatcaatatggcggtcgaagatgaaatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgt |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15517460 |
aaaatcaatatggctgtcgaagatgaaatgaacgcagatgcatctgatattgcaaaccccaaaaatgatggtttcttcaaaaagtttggttttcctgtgt |
15517559 |
T |
|
| Q |
118 |
catcgataccacctggtaaagtaacggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaaga |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15517560 |
tatcgataccacctggtaaagtaactgcagcagcgaacactccggtagcaatgactgttgaaattagcatacacgactccgcagtttttttcatccaaga |
15517659 |
T |
|
| Q |
218 |
ctctgcatctttccttagtttttcatgctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgc |
304 |
Q |
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| T |
15517660 |
ctctgcatcttcccttagtttttcatgctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgc |
15517746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 21 - 306
Target Start/End: Original strand, 15493637 - 15493922
Alignment:
| Q |
21 |
atcaatatggcggtcgaagatgaaatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcat |
120 |
Q |
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|||||||| |||||||||| ||| || || ||| ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
15493637 |
atcaatatcgcggtcgaagctgagataaatgcaaatgtgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcat |
15493736 |
T |
|
| Q |
121 |
cgataccacctggtaaagtaacggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactc |
220 |
Q |
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| T |
15493737 |
cggtaccacctggtaaagtagttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagtttttttcatccaagactc |
15493836 |
T |
|
| Q |
221 |
tgcatctttccttagtttttcatgctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgctg |
306 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||| ||||||| |
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| T |
15493837 |
tgcatcttcccttagtttttcatgctcattcgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctg |
15493922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 15533973 - 15534261
Alignment:
| Q |
18 |
aaaatcaatatggcggtcgaagatgaaatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||| || |||| |||| ||||||||||||| |||| |
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| T |
15533973 |
aaaatcaatatggcggtcgaagatgaaatgaatgcagatgcatctgatgttgcaaataccaagaatggtgttttcgtcaactagtttggttttccggtgt |
15534072 |
T |
|
| Q |
118 |
catcgataccacctggtaaagtaacggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaaga |
217 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
15534073 |
catcggtaccacctggtaaagtaactgcagcagcgaacactccggtagcaatgactgttgaaattagcatacatgactccgcagtttttttcatccaaga |
15534172 |
T |
|
| Q |
218 |
ctctgcatctttccttagtttttcatgctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgctg |
306 |
Q |
| |
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||||||||| | |||||||||| |||||||||||||||| | |||| |||||||| || || ||||||||| |||| || ||||||| |
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| T |
15534173 |
ctctgcatcctcccttagttttgcatgctcatttgagaataactcttgtgcagtcaagcgttcagagtttttcaactttatttgtgctg |
15534261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 15654426 - 15654712
Alignment:
| Q |
18 |
aaaatcaatatggcggtcgaagatgaaatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgt |
117 |
Q |
| |
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||||||||||| || |||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||| | || |
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| T |
15654426 |
aaaatcaatatcgcagtcgcagatgagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagt |
15654525 |
T |
|
| Q |
118 |
catcgataccacctggtaaagtaacggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaaga |
217 |
Q |
| |
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||||| |||| |||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| || ||||| |||| |||||| || |
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| T |
15654526 |
catcggtaccgcctggtaaagtagttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacga |
15654625 |
T |
|
| Q |
218 |
ctctgcatctttccttagtttttcatgctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgc |
304 |
Q |
| |
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|||||||| || |||||| ||||||||||| ||||||| || |||| |||||| | ||||| |||||| || ||| |||||||| |
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| T |
15654626 |
ctctgcattttctcttagtgtttcatgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgc |
15654712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 15645374 - 15645660
Alignment:
| Q |
18 |
aaaatcaatatggcggtcgaagatgaaatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgt |
117 |
Q |
| |
|
||||||||||| || |||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||| | || |
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| T |
15645374 |
aaaatcaatatcgcagtcgcagatgagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagt |
15645473 |
T |
|
| Q |
118 |
catcgataccacctggtaaagtaacggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaaga |
217 |
Q |
| |
|
||||| |||| |||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| || ||||| || | |||||| || |
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| T |
15645474 |
catcggtaccgcctggtaaagtagttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggccgtttttttcatccacga |
15645573 |
T |
|
| Q |
218 |
ctctgcatctttccttagtttttcatgctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgc |
304 |
Q |
| |
|
|||||||| || |||||| ||||||||||| ||||||| || |||| |||||| | ||||| |||||| || ||| |||||||| |
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| T |
15645574 |
ctctgcattttctcttagtgtttcatgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgc |
15645660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 15624749 - 15624987
Alignment:
| Q |
18 |
aaaatcaatatggcggtcgaagatgaaatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgt |
117 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| ||| ||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||| | | |
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|
| T |
15624749 |
aaaatcaatatcgcggtcgcagatgagatgaatgcaaatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagaat |
15624848 |
T |
|
| Q |
118 |
catcgataccacctggtaaagtaacggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaaga |
217 |
Q |
| |
|
||||| |||| |||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| || ||||| |||| |||||| || |
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| T |
15624849 |
catcggtaccgcctggtaaagtagttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacga |
15624948 |
T |
|
| Q |
218 |
ctctgcatctttccttagtttttcatgctcatttgagaa |
256 |
Q |
| |
|
|||||| | || |||||| ||||||||||| ||||||| |
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|
| T |
15624949 |
ctctgcgttttctcttagtgtttcatgctcaattgagaa |
15624987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 70 - 271
Target Start/End: Original strand, 15601209 - 15601410
Alignment:
| Q |
70 |
caaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagtaacggcagcagcgaacactccggttgcaat |
169 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||| ||||| |
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|
| T |
15601209 |
caaacaccaaaaatgatggtttcttcaaataatttggttttcctgtgtcatcgataccgcctggtacagtagttgcagcagcaaacactccggtagcaat |
15601308 |
T |
|
| Q |
170 |
gactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagtttttcatgctcatttgagaacagttcttctgca |
269 |
Q |
| |
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||| | ||||||||||||||| ||||| || | |||||| |||||||||| || |||||||||| |||||| |||||||| | ||||| |||| |
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| T |
15601309 |
gacggctgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttagtttttgatgctcttttgagaagacttcttgtgca |
15601408 |
T |
|
| Q |
270 |
gt |
271 |
Q |
| |
|
|| |
|
|
| T |
15601409 |
gt |
15601410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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