View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_42 (Length: 291)
Name: NF12931_low_42
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 32801544 - 32801268
Alignment:
| Q |
1 |
tagctttaagctcagatttcatcctctaatctctgaatcttatctaaaacctttgcttgcaaaattgaaaaagtcatatatatctttcttgatgggtttc |
100 |
Q |
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| T |
32801544 |
tagctttaagctcagatttcatcctctaatctctgaatcttatctaaaacctttgcttgcaaaattgaaaaagtcatatatatctttcttgatgggtttc |
32801445 |
T |
|
| Q |
101 |
ttcatatagatattgtctagctttagtgaaaggtgaagtgtgataaatcaaccagatgtaaaatgcaaaatctaaatat--atatgtagtaggttatggg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32801444 |
ttcatatagatattgtctagctttagtgaaaggtgaagtgtgataaatcaaccagctgtaaaatgcaaaatctaaatatatatatgtagtaggttatggg |
32801345 |
T |
|
| Q |
199 |
ccacaaagtcatgacaatcaccacacattcatgaactatattagggcacttaccacataacttaaattggttgttac |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32801344 |
ccacaaagtcatgacaatcaccacacattcatgaactatattagggcacttaccacataacttaaattggttgttac |
32801268 |
T |
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