View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_52 (Length: 248)
Name: NF12931_low_52
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 35273847 - 35274069
Alignment:
| Q |
15 |
tgatgaatcttcaaagagaagctcaatttttcaagggacagtatctgctctatctgatccttctcatcatccatggcgtatgcttcaggtatatatgatt |
114 |
Q |
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| T |
35273847 |
tgatgaatcttcaaagagaagctcaatttttcaagggacagtatctgctctatctgatccttctcatcatccatggcgtatgcttcaggtatatatgatt |
35273946 |
T |
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| Q |
115 |
tcttcttttggtgtatattatttcaaatgcatataatgttatgtagtatatttttgttccataaatgttgttacagttgaagttgatagataactttcca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273947 |
tcttcttttggtgtatattatttcaaatgcatataatgttatgtcgtatatttttgttccataaatgttgttacagttgaagttgatagataactttcca |
35274046 |
T |
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| Q |
215 |
taattagataatgcatggttcat |
237 |
Q |
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||||||||||||||||||||||| |
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| T |
35274047 |
taattagataatgcatggttcat |
35274069 |
T |
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