View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12931_low_53 (Length: 247)

Name: NF12931_low_53
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12931_low_53
NF12931_low_53
[»] chr5 (8 HSPs)
chr5 (82-135)||(5271936-5271989)
chr5 (31-65)||(37523232-37523266)
chr5 (31-65)||(37563404-37563438)
chr5 (82-135)||(19131318-19131371)
chr5 (31-65)||(19459716-19459750)
chr5 (31-61)||(37687972-37688002)
chr5 (84-125)||(4576645-4576686)
chr5 (82-135)||(29930718-29930771)
[»] chr7 (12 HSPs)
chr7 (31-135)||(43212865-43212967)
chr7 (33-68)||(13467042-13467077)
chr7 (84-135)||(39390662-39390713)
chr7 (82-123)||(17040337-17040378)
chr7 (82-135)||(41161282-41161335)
chr7 (32-68)||(15314564-15314600)
chr7 (92-131)||(35180732-35180771)
chr7 (31-66)||(41161347-41161382)
chr7 (35-68)||(17040295-17040328)
chr7 (82-135)||(38603875-38603928)
chr7 (82-135)||(44416022-44416075)
chr7 (31-68)||(48176963-48177000)
[»] chr4 (8 HSPs)
chr4 (82-135)||(21295012-21295065)
chr4 (31-65)||(33634656-33634690)
chr4 (31-68)||(22523376-22523413)
chr4 (82-135)||(32038231-32038284)
chr4 (82-123)||(33634702-33634743)
chr4 (31-68)||(37041669-37041706)
chr4 (32-68)||(7764009-7764045)
chr4 (91-135)||(30106196-30106240)
[»] chr6 (2 HSPs)
chr6 (84-135)||(26542506-26542557)
chr6 (31-64)||(4295807-4295840)
[»] chr1 (5 HSPs)
chr1 (31-70)||(34824585-34824624)
chr1 (83-135)||(1060314-1060366)
chr1 (84-135)||(45563669-45563720)
chr1 (83-123)||(8318754-8318794)
chr1 (32-68)||(18341004-18341040)
[»] chr2 (7 HSPs)
chr2 (31-65)||(33259886-33259920)
chr2 (31-68)||(43973476-43973513)
chr2 (32-68)||(34810034-34810070)
chr2 (82-133)||(42714254-42714305)
chr2 (83-133)||(11476267-11476317)
chr2 (31-68)||(18209603-18209640)
chr2 (33-65)||(27577892-27577924)
[»] chr8 (11 HSPs)
chr8 (32-65)||(1596614-1596647)
chr8 (32-68)||(26802236-26802272)
chr8 (91-135)||(39333656-39333700)
chr8 (35-68)||(3941291-3941324)
chr8 (82-135)||(10011228-10011281)
chr8 (82-135)||(12178189-12178242)
chr8 (82-135)||(12422617-12422670)
chr8 (35-68)||(32550109-32550142)
chr8 (31-64)||(36396718-36396751)
chr8 (82-135)||(36396764-36396817)
chr8 (82-135)||(42586711-42586764)
[»] chr3 (6 HSPs)
chr3 (32-68)||(28405008-28405044)
chr3 (82-133)||(17229086-17229137)
chr3 (31-68)||(32959194-32959231)
chr3 (32-65)||(36841376-36841409)
chr3 (31-68)||(46250091-46250128)
chr3 (31-67)||(32827657-32827693)


Alignment Details
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 5271936 - 5271989
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    ||||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  5271936 tagattttaagaaaagttaattctaataacttttcattttagagtcaaaataga 5271989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 37523232 - 37523266
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgtt 65  Q
    |||||||||||||||||||||||||||||||||||    
T  37523232 tgagttttaacttgtacatgtgttacctccttgtt 37523266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 37563404 - 37563438
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgtt 65  Q
    |||||||||||||||||||||||||||||||||||    
T  37563404 tgagttttaacttgtacatgtgttacctccttgtt 37563438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 19131371 - 19131318
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||||| |||||||||| ||||||| |||||||||||| | |||||||||    
T  19131371 tagattttaaaaaaagttaatcctaatagcttttcattttagggtcaaaataga 19131318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 19459750 - 19459716
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgtt 65  Q
    |||||||||||||||||| ||||||||||||||||    
T  19459750 tgagttttaacttgtacacgtgttacctccttgtt 19459716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 37687972 - 37688002
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctcct 61  Q
    |||||||||||||||||||||||||||||||    
T  37687972 tgagttttaacttgtacatgtgttacctcct 37688002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 4576645 - 4576686
Alignment:
Q  84 gattttaagaaaagttaattctaatagtttttcattttagag 125  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||    
T  4576645 gattttaagaaaagttaatcctaatagcttttcatattagag 4576686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 29930771 - 29930718
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||| ||||||| |||| ||||||| |||||||||||| | |||||||||    
T  29930771 tagattttgagaaaagctaatcctaatagcttttcattttagggtcaaaataga 29930718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 43212967 - 43212865
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgtttttttnnnnnnnnnnntagattttaagaaaagttaattctaatagtttttcattttagagacaaa 130  Q
    |||| |||||||||||||||||||||||||||||||||             | |||||| |||||||||||||||||||| |||||||||||| ||||||    
T  43212967 tgagatttaacttgtacatgtgttacctccttgttttt--aaaaaaaaaaattgattttgagaaaagttaattctaatagcttttcattttagggacaaa 43212870  T
Q  131 ataga 135  Q
    |||||    
T  43212869 ataga 43212865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 13467042 - 13467077
Alignment:
Q  33 agttttaacttgtacatgtgttacctccttgttttt 68  Q
    ||||||||||||||||||||||||||||||||||||    
T  13467042 agttttaacttgtacatgtgttacctccttgttttt 13467077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 39390713 - 39390662
Alignment:
Q  84 gattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||| |||||||||||| ||||||| |||||||||||||| |||||||||    
T  39390713 gattttgagaaaagttaatcctaatagcttttcattttagagtcaaaataga 39390662  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 17040337 - 17040378
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttag 123  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  17040337 tagattttaagaaaagttaatcctaatagcttttcattttag 17040378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 41161335 - 41161282
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||| ||||||| |||| ||||||| |||||||||||||| |||||||||    
T  41161335 tagattttgagaaaagctaatcctaatagcttttcattttagagtcaaaataga 41161282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 15314564 - 15314600
Alignment:
Q  32 gagttttaacttgtacatgtgttacctccttgttttt 68  Q
    ||||||||||||| |||||||||||||||||||||||    
T  15314564 gagttttaacttgcacatgtgttacctccttgttttt 15314600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 35180771 - 35180732
Alignment:
Q  92 gaaaagttaattctaatagtttttcattttagagacaaaa 131  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  35180771 gaaaagctaattctaatagcttttcattttagagacaaaa 35180732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 41161382 - 41161347
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgttt 66  Q
    ||||||||||| ||||||||||||||||||||||||    
T  41161382 tgagttttaacatgtacatgtgttacctccttgttt 41161347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 17040295 - 17040328
Alignment:
Q  35 ttttaacttgtacatgtgttacctccttgttttt 68  Q
    ||||||||||| ||||||||||||||||||||||    
T  17040295 ttttaacttgttcatgtgttacctccttgttttt 17040328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 38603928 - 38603875
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||| ||||||| |||| ||||||| |||||||||||| | |||||||||    
T  38603928 tagattttgagaaaagctaatcctaatagcttttcattttagggtcaaaataga 38603875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 44416022 - 44416075
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||| |||||||||||| | ||||| |||| ||||||||| |||||||||    
T  44416022 tagattttgagaaaagttaatccaaatagctttttattttagagtcaaaataga 44416075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 48176963 - 48177000
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgttttt 68  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  48176963 tgagtttcaacttgtaaatgtgttacctccttgttttt 48177000  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 21295065 - 21295012
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | |||||||||    
T  21295065 tagattttaagaaaagttaatcctaatagcttttcattttagggtcaaaataga 21295012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 33634656 - 33634690
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgtt 65  Q
    |||||||||||||||||||||||||||||||||||    
T  33634656 tgagttttaacttgtacatgtgttacctccttgtt 33634690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 22523376 - 22523413
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgttttt 68  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22523376 tgagttttaacttgtacatttgttacctccttgttttt 22523413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 32038231 - 32038284
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||| ||||||| |||||||||||| |||| |||||| || |||||||||    
T  32038231 tagattttgagaaaagctaattctaatagatttttattttaaagtcaaaataga 32038284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 33634702 - 33634743
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttag 123  Q
    |||||||||||||||| |||| ||||||| ||||||||||||    
T  33634702 tagattttaagaaaagctaatcctaatagcttttcattttag 33634743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 37041706 - 37041669
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgttttt 68  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  37041706 tgagttttaacttgtacaagtgttacctccttgctttt 37041669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 7764009 - 7764045
Alignment:
Q  32 gagttttaacttgtacatgtgttacctccttgttttt 68  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  7764009 gagttttaaattgtacatgtattacctccttgttttt 7764045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 30106196 - 30106240
Alignment:
Q  91 agaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    ||||||| |||| ||||||| |||||||||||||| |||||||||    
T  30106196 agaaaagctaatcctaatagcttttcattttagagtcaaaataga 30106240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 26542557 - 26542506
Alignment:
Q  84 gattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||| |||||||||||| ||||||| |||||||||||||| |||||||||    
T  26542557 gattttgagaaaagttaatcctaatagcttttcattttagagtcaaaataga 26542506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 4295807 - 4295840
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgt 64  Q
    ||||||||||||||||||||||||||||||||||    
T  4295807 tgagttttaacttgtacatgtgttacctccttgt 4295840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 34824624 - 34824585
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgttttttt 70  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  34824624 tgagttttaacctgtacatgtgttacctccttgttttttt 34824585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 1060314 - 1060366
Alignment:
Q  83 agattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    ||||||| ||||||| |||||||||||| |||||||||||| | |||||||||    
T  1060314 agattttgagaaaagctaattctaatagcttttcattttagggtcaaaataga 1060366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 45563720 - 45563669
Alignment:
Q  84 gattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||| |||||||||||| ||||||| |||| ||||||||| |||||||||    
T  45563720 gattttgagaaaagttaatcctaatagctttttattttagagtcaaaataga 45563669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 8318754 - 8318794
Alignment:
Q  83 agattttaagaaaagttaattctaatagtttttcattttag 123  Q
    ||||||| ||||||| |||||||||||| ||||||||||||    
T  8318754 agattttgagaaaagctaattctaatagcttttcattttag 8318794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 18341040 - 18341004
Alignment:
Q  32 gagttttaacttgtacatgtgttacctccttgttttt 68  Q
    |||||||||||||||||| |||||| |||||||||||    
T  18341040 gagttttaacttgtacatatgttacttccttgttttt 18341004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 33259886 - 33259920
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgtt 65  Q
    |||||||||||||||||||||||||||||||||||    
T  33259886 tgagttttaacttgtacatgtgttacctccttgtt 33259920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 43973513 - 43973476
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgttttt 68  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  43973513 tgagttttaacatgtacatgtgttacctccttgttttt 43973476  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 34810034 - 34810070
Alignment:
Q  32 gagttttaacttgtacatgtgttacctccttgttttt 68  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34810034 gagttttaacttgtacatgtgtgacctccttgttttt 34810070  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 42714254 - 42714305
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaata 133  Q
    |||||||| ||||||| |||| |||||||||||| ||||||||| |||||||    
T  42714254 tagattttgagaaaagctaatcctaatagttttttattttagagtcaaaata 42714305  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 11476267 - 11476317
Alignment:
Q  83 agattttaagaaaagttaattctaatagtttttcattttagagacaaaata 133  Q
    ||||||| ||||||| |||| ||||||| |||||||||||||| |||||||    
T  11476267 agattttgagaaaagctaatcctaatagcttttcattttagagtcaaaata 11476317  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 18209603 - 18209640
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgttttt 68  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  18209603 tgagttttaacttgtacatgtgttagctccttattttt 18209640  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 27577924 - 27577892
Alignment:
Q  33 agttttaacttgtacatgtgttacctccttgtt 65  Q
    |||||||| ||||||||||||||||||||||||    
T  27577924 agttttaagttgtacatgtgttacctccttgtt 27577892  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 1596614 - 1596647
Alignment:
Q  32 gagttttaacttgtacatgtgttacctccttgtt 65  Q
    ||||||||||||||||||||||||||||||||||    
T  1596614 gagttttaacttgtacatgtgttacctccttgtt 1596647  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 26802272 - 26802236
Alignment:
Q  32 gagttttaacttgtacatgtgttacctccttgttttt 68  Q
    |||||||||||||||||||| ||||||||||||||||    
T  26802272 gagttttaacttgtacatgtcttacctccttgttttt 26802236  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 39333656 - 39333700
Alignment:
Q  91 agaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||||||| |||||||||||||||||||||  |||||||||    
T  39333656 agaaaagttaatcctaatagtttttcattttagaatcaaaataga 39333700  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 3941324 - 3941291
Alignment:
Q  35 ttttaacttgtacatgtgttacctccttgttttt 68  Q
    |||||||||||||||||||| |||||||||||||    
T  3941324 ttttaacttgtacatgtgttccctccttgttttt 3941291  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 10011228 - 10011281
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||| ||||||| |||| ||||||| |||||||||||| | |||||||||    
T  10011228 tagattttgagaaaagctaatcctaatagcttttcattttagggtcaaaataga 10011281  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 12178189 - 12178242
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||| ||||||| |||| |||||||||||| |||||||||  ||||||||    
T  12178189 tagattttgagaaaagctaatcctaatagttttttattttagagtgaaaataga 12178242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 12422617 - 12422670
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||| ||||||| |||| |||||||||||| |||||||||  ||||||||    
T  12422617 tagattttgagaaaagctaatcctaatagttttttattttagagtgaaaataga 12422670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 32550142 - 32550109
Alignment:
Q  35 ttttaacttgtacatgtgttacctccttgttttt 68  Q
    ||||||||||| ||||||||||||||||||||||    
T  32550142 ttttaacttgttcatgtgttacctccttgttttt 32550109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 36396718 - 36396751
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgt 64  Q
    |||||||||||||||||||||||||||| |||||    
T  36396718 tgagttttaacttgtacatgtgttaccttcttgt 36396751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 36396764 - 36396817
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||| ||||||| |||| ||||||| |||||||||||| | |||||||||    
T  36396764 tagattttgagaaaagctaatcctaatagcttttcattttagggtcaaaataga 36396817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 42586711 - 42586764
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaataga 135  Q
    |||||||| ||||||| |||| ||||||| |||||||||||||| || ||||||    
T  42586711 tagattttgagaaaagctaatcctaatagcttttcattttagagtcataataga 42586764  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 28405008 - 28405044
Alignment:
Q  32 gagttttaacttgtacatgtgttacctccttgttttt 68  Q
    |||||||||| ||||||||||||||||||||||||||    
T  28405008 gagttttaacatgtacatgtgttacctccttgttttt 28405044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 17229137 - 17229086
Alignment:
Q  82 tagattttaagaaaagttaattctaatagtttttcattttagagacaaaata 133  Q
    |||||||| |||||||||||| ||||||| |||||||||||||  |||||||    
T  17229137 tagattttgagaaaagttaatcctaatagcttttcattttagaatcaaaata 17229086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 32959231 - 32959194
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgttttt 68  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  32959231 tgagttttaacatgtgcatgtgttacctccttgttttt 32959194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 36841376 - 36841409
Alignment:
Q  32 gagttttaacttgtacatgtgttacctccttgtt 65  Q
    |||||||||||||||||||||||| |||||||||    
T  36841376 gagttttaacttgtacatgtgttatctccttgtt 36841409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 46250091 - 46250128
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgttttt 68  Q
    |||||||||||||||||||| | |||||||||||||||    
T  46250091 tgagttttaacttgtacatgagctacctccttgttttt 46250128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 32827693 - 32827657
Alignment:
Q  31 tgagttttaacttgtacatgtgttacctccttgtttt 67  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  32827693 tgagttttaacttttacatgtgttacttccttgtttt 32827657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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