View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_57 (Length: 238)
Name: NF12931_low_57
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 15518174 - 15518399
Alignment:
| Q |
5 |
ttcagcagcatcaaatattagttgagaaggtttatttatgatttcatttaactccttctttgatgagtagtatctttctagaatcgtggtccagagaaat |
104 |
Q |
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| T |
15518174 |
ttcagcagcatcaaatattagttgagaaggtttatttatgatttcatttaactccttctttgatgagtagtatctttctagaatcgtggtccagagaaat |
15518273 |
T |
|
| Q |
105 |
ttaaccaattggaaaaccatatgatttttcaggcctgcgatacaaaatttggttactaagttaatgaaaccaatgtaaataaattaataaagttaatgta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15518274 |
ttaaccaattggaaaaccatatgatttttcaggcctgcgatacaaaatttggttactaagttaatgaaaccaatgtaaataaattaataaagttaatgta |
15518373 |
T |
|
| Q |
205 |
aggtttaccaggattggtgatgatgt |
230 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
15518374 |
aggtttaccaggattggtgatgatgt |
15518399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15534984 - 15535217
Alignment:
| Q |
1 |
caacttcagcagcatcaaatattagttgagaaggtttatttatgatttcatttaactccttctttgatgagtagtatctttctagaatcgtggtccagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| || |
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| T |
15534984 |
caacttcagcagcatcaaatattagttgagaaggttcatttatgatttcatttaactcctt---tgatgagtagtgtctgtctagaatcgtggtccaaag |
15535080 |
T |
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| Q |
101 |
aaatttaaccaattggaaaaccatatgatttttcaggcctgcgatacaaaatttggttactaagttaatgaaaccaatgtaaataaatta-------ata |
193 |
Q |
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| T |
15535081 |
aaatttaacgaattgaaaaaccatatgatttttcaggcctgcaatacaaaatttggttattaagttaatgaaaccaatgtaaaaaaattaataaaatata |
15535180 |
T |
|
| Q |
194 |
aagttaatgtaaggtttaccaggattggtgatgatgt |
230 |
Q |
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| T |
15535181 |
aagttaatgtaaggtttaccaggattggtcatgatgt |
15535217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15655319 - 15655557
Alignment:
| Q |
1 |
caacttcagcagcatcaaatattagttgagaaggtttatttatgatttcatttaactccttctttgatgagtagtatctttctagaatcgtggtccagag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| |||||||||||||| | |||| |||||||||||||| || |
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| T |
15655319 |
caacttcagcagcatcaaatattagttgagaaggttcattaatgattttatttagctcctcctttgatgagtagtgtttttcaagaatcgtggtccaaag |
15655418 |
T |
|
| Q |
101 |
aaatttaaccaattggaaaaccatatgatttttcaggcctgcgatacaaaatttggttac-taagttaatgaaaccaatgtaaataaatt-----aat-- |
192 |
Q |
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| T |
15655419 |
aaatttaaccaattggaaaaccacgtgatttttcatgcctgcaatacgagatatggttacttaagttaacgaaaccaatgtaaaagaatttaaaaaatat |
15655518 |
T |
|
| Q |
193 |
-aaagttaatgtaagg-tttaccaggattggtgatgatg |
229 |
Q |
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| T |
15655519 |
aaaagttaatgtaaggatttaccaggattggtcatgatg |
15655557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15646167 - 15646405
Alignment:
| Q |
1 |
caacttcagcagcatcaaatattagttgagaaggtttatttatgatttcatttaactccttctttgatgagtagtatctttctagaatcgtggtccagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||| ||||||| | |||| |||||||||||||| || |
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| T |
15646167 |
caacttcagcagcatcaaatattagttgagaaggttcatttaggattttgtttaactcctcctttgaggagtagtgtttttcaagaatcgtggtccaaag |
15646266 |
T |
|
| Q |
101 |
aaatttaaccaattggaaaaccatatgatttttcaggcctgcgatacaaaatttggttac-taagttaatgaaaccaatgtaaa-------taaattaat |
192 |
Q |
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|||||||||||| |||||||||| |||||||||| |||||| |||| |||| ||||||| |||||||| |||||||||||||| |||| ||| |
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| T |
15646267 |
aaatttaaccaactggaaaaccacgtgatttttcatgcctgcaatacgaaatatggttacttaagttaacgaaaccaatgtaaaagaattttaaaaaaat |
15646366 |
T |
|
| Q |
193 |
-aaagttaatgtaagg-tttaccaggattggtgatgatg |
229 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||||| |
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| T |
15646367 |
aaaagttaatgtaaggatttaccaggattggtcatgatg |
15646405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 15494383 - 15494539
Alignment:
| Q |
1 |
caacttcagcagcatcaaatattagttgagaaggtttatttatgatttcatttaactccttctttgatgagtagtatctttctagaatcgtggtccagag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||| ||| ||||||||||| ||||| || |
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| T |
15494383 |
caacttcagcagcatcaaatattagttgagaaggtttatttatgatttcgtttaactcatcctttgatgtgtagtgtctgtctagaatcgttgtccaaag |
15494482 |
T |
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| Q |
101 |
aaatttaaccaattggaaaaccatatgatttttcaggcctgcgatacaaaatttggt |
157 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |||||| |||| |||| |||| |
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| T |
15494483 |
aaatttaaccaattggaaaaccacgtgatttttcatgcctgcaatacgaaatatggt |
15494539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 15625769 - 15625952
Alignment:
| Q |
1 |
caacttcagcagcatcaaatattagttgagaaggtttatttatgatttcatttaactccttctttgatgagtagtatctttctagaatcgtggtccagag |
100 |
Q |
| |
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||||||| |||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||| | |||| ||||| |||||||| || |
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| T |
15625769 |
caacttctgcagcatcaaatattacctgagaaggttcatttatgattttatttaactccacctttgatgagtagtgtttttcaagaatggtggtccaaag |
15625868 |
T |
|
| Q |
101 |
aaatttaaccaattggaaaaccatatgatttttcaggcctgcgatacaaaatttggtt-actaagttaatgaaaccaatgtaaa |
183 |
Q |
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||||||||| ||||||||||| || ||| |||||| ||||| |||| || | ||||| | ||||||||||||||||||||||| |
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| T |
15625869 |
aaatttaactaattggaaaacaatgtgacttttcatgcctgaaatacgaattatggttaattaagttaatgaaaccaatgtaaa |
15625952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 15605835 - 15605988
Alignment:
| Q |
1 |
caacttcagcagcatcaaatattagttgagaaggtttatttatgatttcatttaactccttctttgatgagtagtatctttctagaatcgtggtccagag |
100 |
Q |
| |
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||||||| ||||||||||| || ||||||||||||| ||||||||||| || |||||||| || | ||||| | || | |||||| ||||| || |
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| T |
15605835 |
caacttctgcagcatcaaaaatcagttgagaaggttgatttatgattttatgtaactcctc---tggagggtagtgttggtccaaaatcgttgtccaaag |
15605931 |
T |
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| Q |
101 |
aaatttaaccaattggaaaaccatatgatttttcaggcctgcgatacaaaatttggt |
157 |
Q |
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||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |
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|
| T |
15605932 |
aaatttaaccaattggaaaaccacgtgatttttcatgcctgcaatacaaaatttggt |
15605988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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