View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_59 (Length: 234)
Name: NF12931_low_59
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 12666883 - 12666687
Alignment:
| Q |
18 |
acaactctaattaaaccaaactgtaatattctcccccaaaaagcatttannnnnnncctcataattccttcattattcttctctcaacacaacatacaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
12666883 |
acaactctaattaaaccaaactgtaatattctcccccaaaaagcattaatttttttcctgagaattccttcattattcttctctcaacacaacatacaaa |
12666784 |
T |
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| Q |
118 |
tccaacgaaacaatgcaatacatagatacaatacnnnnnnnnnnnnnnaaaatacaaagaaacaacacaacacaaatccatttcaccaccgccgaattct |
217 |
Q |
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||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12666783 |
tccaacgaaacaacacaatacatagataccata----ttttttttttgaaaatacaaagaaacaacacaacacatatccatttcaccaccgccgaattct |
12666688 |
T |
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Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 667434 - 667627
Alignment:
| Q |
18 |
acaactctaattaaaccaaactgtaatattctcccccaaaaagcatttannnnnnncctcataattccttcattattcttctctcaacacaacatacaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
667434 |
acaactctaattaaaccaaactgtaatattctcccccaaaaagcattaatttttttcctcagaattccttcattattcttctctcaacgcaacatacaaa |
667533 |
T |
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| Q |
118 |
tccaacgaaacaatgcaatacatagatacaatacnnnnnnnnnnnnnnaaaatacaaagaaacaacacaacacaaatccatttcaccaccgccgaattct |
217 |
Q |
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||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
667534 |
tccaacgaaacaacacaatacatagataccat-------tttttttttaaaatacaaagaaacaacacaacacatatccatttcaccatcgccgaattct |
667626 |
T |
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