View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12931_low_60 (Length: 217)

Name: NF12931_low_60
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12931_low_60
NF12931_low_60
[»] chr4 (14 HSPs)
chr4 (15-199)||(10164759-10164944)
chr4 (55-97)||(13307886-13307928)
chr4 (61-115)||(18513231-18513285)
chr4 (61-98)||(37496719-37496756)
chr4 (64-101)||(47492397-47492434)
chr4 (61-116)||(3947755-3947810)
chr4 (61-116)||(12895105-12895160)
chr4 (66-101)||(22799897-22799932)
chr4 (55-93)||(10634999-10635037)
chr4 (64-98)||(11797635-11797669)
chr4 (66-108)||(25400861-25400903)
chr4 (55-97)||(44362675-44362717)
chr4 (61-98)||(21945518-21945555)
chr4 (66-98)||(13117449-13117481)
[»] chr7 (13 HSPs)
chr7 (55-98)||(1885582-1885625)
chr7 (55-98)||(5937428-5937471)
chr7 (55-100)||(2144544-2144589)
chr7 (66-98)||(25956465-25956497)
chr7 (55-98)||(44317293-44317336)
chr7 (61-91)||(7241008-7241038)
chr7 (55-101)||(37820089-37820135)
chr7 (61-98)||(7438721-7438758)
chr7 (65-98)||(36013805-36013838)
chr7 (56-92)||(2143866-2143902)
chr7 (61-101)||(37775997-37776037)
chr7 (61-97)||(44172898-44172934)
chr7 (61-101)||(46550795-46550835)
[»] chr8 (8 HSPs)
chr8 (66-116)||(22600549-22600599)
chr8 (61-101)||(42874537-42874577)
chr8 (56-98)||(31119097-31119139)
chr8 (55-111)||(10497810-10497866)
chr8 (55-98)||(26915247-26915290)
chr8 (55-98)||(34073985-34074028)
chr8 (55-97)||(27733856-27733898)
chr8 (61-98)||(31548300-31548337)
[»] chr5 (13 HSPs)
chr5 (62-103)||(38784822-38784863)
chr5 (55-98)||(21319952-21319995)
chr5 (55-95)||(30080511-30080551)
chr5 (55-98)||(10010563-10010606)
chr5 (61-96)||(15294946-15294981)
chr5 (61-116)||(31084338-31084393)
chr5 (64-98)||(19167583-19167617)
chr5 (61-103)||(24906303-24906345)
chr5 (61-111)||(39698556-39698606)
chr5 (61-115)||(41558644-41558698)
chr5 (61-98)||(8420042-8420079)
chr5 (66-98)||(10009846-10009878)
chr5 (61-101)||(27253300-27253340)
[»] chr1 (13 HSPs)
chr1 (56-101)||(24462274-24462319)
chr1 (65-101)||(28170400-28170436)
chr1 (61-101)||(30847724-30847764)
chr1 (56-111)||(18946028-18946083)
chr1 (66-101)||(26390137-26390172)
chr1 (113-148)||(44126814-44126849)
chr1 (55-101)||(46748912-46748958)
chr1 (55-100)||(34184677-34184722)
chr1 (61-98)||(38078668-38078705)
chr1 (65-101)||(17007965-17008001)
chr1 (111-139)||(32638537-32638565)
chr1 (55-103)||(40686760-40686808)
chr1 (61-101)||(42386401-42386440)
[»] chr6 (14 HSPs)
chr6 (55-146)||(19369826-19369924)
chr6 (55-98)||(6751889-6751932)
chr6 (61-116)||(9024165-9024220)
chr6 (61-116)||(12696339-12696394)
chr6 (55-97)||(10031579-10031621)
chr6 (21-98)||(28715271-28715347)
chr6 (68-111)||(785449-785492)
chr6 (55-98)||(1334670-1334713)
chr6 (68-115)||(7942277-7942324)
chr6 (64-98)||(26402687-26402721)
chr6 (57-114)||(602653-602710)
chr6 (61-98)||(10157999-10158036)
chr6 (61-101)||(4859117-4859157)
chr6 (61-101)||(31384935-31384975)
[»] chr3 (6 HSPs)
chr3 (55-98)||(14338490-14338533)
chr3 (47-90)||(12704672-12704714)
chr3 (61-111)||(14832114-14832164)
chr3 (61-98)||(10954967-10955004)
chr3 (64-97)||(13005444-13005477)
chr3 (61-98)||(20503480-20503517)
[»] chr2 (8 HSPs)
chr2 (55-98)||(43586012-43586055)
chr2 (55-101)||(14450799-14450845)
chr2 (66-98)||(13501085-13501117)
chr2 (66-97)||(24067273-24067304)
chr2 (56-98)||(44984657-44984699)
chr2 (64-101)||(37402088-37402125)
chr2 (61-101)||(18570987-18571027)
chr2 (61-101)||(43065573-43065613)
[»] scaffold0314 (1 HSPs)
scaffold0314 (55-98)||(8957-9000)
[»] scaffold0223 (1 HSPs)
scaffold0223 (61-111)||(20187-20237)
[»] scaffold0024 (1 HSPs)
scaffold0024 (55-115)||(18098-18158)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 10164944 - 10164759
Alignment:
Q  15 agcacagacacgggacacggcactgacactgtcacggataaaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggaca 114  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10164944 agcacagacacgggacacgacactgacaccgtcacggataaaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggaca 10164845  T
Q  115 cgccttcaattagaagtgttgatgcaacagaggttgtaattaagaaggatgtgtgtatatttgtttgtactat-agacaaatctat 199  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| | | ||||||||||||    
T  10164844 cgccttcagttagaagtgttgatgcaacagaggttgtaattaataaggatgtgcgtatatttgttggtaatctgagacaaatctat 10164759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 13307886 - 13307928
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgt 97  Q
    ||||| |||| ||||||||||||||||||||||||||||||||    
T  13307886 aaaattttgagaaaatgacataattcaatgtaatcacaagtgt 13307928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 18513285 - 18513231
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggacac 115  Q
    |||| ||||||||||||||||||||||||| | |||||||| | |||||||||||    
T  18513285 ttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggacac 18513231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 37496719 - 37496756
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||| |||||||||||||||||||||||||||||||||    
T  37496719 ttgagaaaatgacataattcaatgtaatcacaagtgtc 37496756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 47492397 - 47492434
Alignment:
Q  64 aaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||||||||||||||| |||||||||||||||||||||    
T  47492397 aaaaaatgacataatttaatgtaatcacaagtgtcagt 47492434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 3947810 - 3947755
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggacacg 116  Q
    ||||||||||  ||||||||| |||||| |||||||||||| | ||||||||||||    
T  3947810 ttgaaaaaatcgcataattcagtgtaattacaagtgtcagtgtcgtgtcggacacg 3947755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 12895160 - 12895105
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggacacg 116  Q
    |||||||||| ||||||||||| ||||| ||||||||| || | ||||||||||||    
T  12895160 ttgaaaaaatcacataattcaaagtaattacaagtgtcggtgtcgtgtcggacacg 12895105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 22799932 - 22799897
Alignment:
Q  66 aaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    ||||||||||||||||||||||||||| ||||||||    
T  22799932 aaaatgacataattcaatgtaatcacacgtgtcagt 22799897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 10634999 - 10635037
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaa 93  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  10634999 aaaattttgaaaaaatgacataattcaatgttatcacaa 10635037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 11797669 - 11797635
Alignment:
Q  64 aaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||||||||||||||| ||||||||||||||||||    
T  11797669 aaaaaatgacataatttaatgtaatcacaagtgtc 11797635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 25400861 - 25400903
Alignment:
Q  66 aaaatgacataattcaatgtaatcacaagtgtcagtatagtgt 108  Q
    |||||||||||||| ||||| |||||| |||||||||||||||    
T  25400861 aaaatgacataattaaatgttatcacatgtgtcagtatagtgt 25400903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 44362675 - 44362717
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgt 97  Q
    ||||| |||| |||||||||||||| |||||||||||||||||    
T  44362675 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44362717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 21945518 - 21945555
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  21945518 ttgaaaaaatgacataattcagtgtaattacaagtgtc 21945555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 13117449 - 13117481
Alignment:
Q  66 aaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||||||| |||||||||||||||||||||||    
T  13117449 aaaatgacaaaattcaatgtaatcacaagtgtc 13117481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 1885582 - 1885625
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  1885582 aaaattttgaaaaaatgacataattcaatgtaatcacaagtgtc 1885625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 5937471 - 5937428
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  5937471 aaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 5937428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 2144589 - 2144544
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcag 100  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||    
T  2144589 aaaattttgagaaaatgacataattcaatgtaatcacacgtgtcag 2144544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 25956465 - 25956497
Alignment:
Q  66 aaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||||||||||||||||||||||||||||||||    
T  25956465 aaaatgacataattcaatgtaatcacaagtgtc 25956497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 44317336 - 44317293
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| || ||||||||||||||||||||||||||| |||||||    
T  44317336 aaaattttaaaaaaatgacataattcaatgtaatcataagtgtc 44317293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 7241038 - 7241008
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcac 91  Q
    |||||||||||||||||||||||||||||||    
T  7241038 ttgaaaaaatgacataattcaatgtaatcac 7241008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 37820089 - 37820135
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    ||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  37820089 aaaattttgaaaaaataacataatttaatgtaatcgcaagtgtcagt 37820135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 7438721 - 7438758
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  7438721 ttgaaaaaatcacataattcaatgtaattacaagtgtc 7438758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 36013838 - 36013805
Alignment:
Q  65 aaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||||||||||||||||||||||||||| |||||    
T  36013838 aaaaatgacataattcaatgtaatcacacgtgtc 36013805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 2143902 - 2143866
Alignment:
Q  56 aaatcttgaaaaaatgacataattcaatgtaatcaca 92  Q
    |||| |||| |||||||||||||||||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcaca 2143866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 37775997 - 37776037
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||| |||||||||||||| |||||||||||| ||||||||    
T  37775997 ttgagaaaatgacataattaaatgtaatcacatgtgtcagt 37776037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 44172934 - 44172898
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgt 97  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  44172934 ttgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 46550835 - 46550795
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    ||||||||||||||||||| | |||||||||| ||||||||    
T  46550835 ttgaaaaaatgacataattgagtgtaatcacatgtgtcagt 46550795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 22600549 - 22600599
Alignment:
Q  66 aaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggacacg 116  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  22600549 aaaatgacataattcaatataatcacaagtgccagtatcgtgtcggacacg 22600599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 42874537 - 42874577
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  42874537 ttgagaaaatgacataattcaatgtaatcacaagtgtcagt 42874577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 31119097 - 31119139
Alignment:
Q  56 aaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtc 31119139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 10497866 - 10497810
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcgg 111  Q
    ||||| |||| ||||| ||||||||  |||||||||||||||||||||| |||||||    
T  10497866 aaaattttgagaaaataacataatttgatgtaatcacaagtgtcagtatcgtgtcgg 10497810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 26915290 - 26915247
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| |||| |||||||||||||| ||||||||||||||||||    
T  26915290 aaaattttgagaaaatgacataatttaatgtaatcacaagtgtc 26915247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 34074028 - 34073985
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||    
T  34074028 aaaattttgaaaaaatgacataatttaatgtaatcataagtgtc 34073985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 27733856 - 27733898
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgt 97  Q
    ||||| |||| ||||||| ||||||||||||||||||||||||    
T  27733856 aaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 31548337 - 31548300
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  31548337 ttgataaaatgacataattcaatgtaatcacatgtgtc 31548300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 38784822 - 38784863
Alignment:
Q  62 tgaaaaaatgacataattcaatgtaatcacaagtgtcagtat 103  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  38784822 tgaaaaaatgatataattcaatgtaatcacaagtgtcagtat 38784863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 21319995 - 21319952
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| |||||||||||| |||||||||||||||||||||||||    
T  21319995 aaaattttgaaaaaatgatataattcaatgtaatcacaagtgtc 21319952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 30080551 - 30080511
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagt 95  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  30080551 aaaattttgagaaaatgacataattcaatgtaatcacaagt 30080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 10010563 - 10010606
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||    
T  10010563 aaaattttgaaaaaatgacataattcattgtaatcacatgtgtc 10010606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 15294946 - 15294981
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtg 96  Q
    |||||||||||||||||||||| |||||||||||||    
T  15294946 ttgaaaaaatgacataattcaaggtaatcacaagtg 15294981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 31084338 - 31084393
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggacacg 116  Q
    |||||||||| ||||||||||||||||| |||||||||  | | ||||||||||||    
T  31084338 ttgaaaaaatcacataattcaatgtaattacaagtgtcgatgtcgtgtcggacacg 31084393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 19167617 - 19167583
Alignment:
Q  64 aaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||||||||| |||||||||||||||||||||||    
T  19167617 aaaaaatgacacaattcaatgtaatcacaagtgtc 19167583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 24906345 - 24906303
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtat 103  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||    
T  24906345 ttgaaaaaatgacataattcagtgtaattacaagtgtcggtat 24906303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 39698556 - 39698606
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcgg 111  Q
    |||||||||| |||||||||| |||||| |||||||||||| | |||||||    
T  39698556 ttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcgg 39698606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 41558698 - 41558644
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggacac 115  Q
    |||| ||||||||||||||||||||||| | | |||||||| | |||||||||||    
T  41558698 ttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcggacac 41558644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 8420042 - 8420079
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  8420042 ttgaaaaaataacataattcaatgtaattacaagtgtc 8420079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 10009846 - 10009878
Alignment:
Q  66 aaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||||||||||||||||||||||||| |||||    
T  10009846 aaaatgacataattcaatgtaatcacatgtgtc 10009878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 27253300 - 27253340
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    ||||||||||| ||||||| |||||||||||| ||||||||    
T  27253300 ttgaaaaaatgtcataattgaatgtaatcacatgtgtcagt 27253340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 24462319 - 24462274
Alignment:
Q  56 aaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||    
T  24462319 aaattttgaaaaaatgacataattcaatgtaatcacaagtttcagt 24462274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 28170400 - 28170436
Alignment:
Q  65 aaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28170400 aaaaatgacataattcaatgtaataacaagtgtcagt 28170436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 30847764 - 30847724
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  30847764 ttgaaaaaatgacataattcaatgtaatcatatgtgtcagt 30847724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 18946083 - 18946028
Alignment:
Q  56 aaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcgg 111  Q
    |||| |||| |||||||||||||||||||||||||| ||||| ||| || ||||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatcacgagtgtgagtgtattgtcgg 18946028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 26390172 - 26390137
Alignment:
Q  66 aaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||||||||||||| |||||||||||||||||||||    
T  26390172 aaaatgacataattgaatgtaatcacaagtgtcagt 26390137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 44126849 - 44126814
Alignment:
Q  113 cacgccttcaattagaagtgttgatgcaacagaggt 148  Q
    ||||||||||||||||||||||| ||||||||||||    
T  44126849 cacgccttcaattagaagtgttggtgcaacagaggt 44126814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 46748958 - 46748912
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    ||||| ||||||||| |||||| |||||||||||||||| |||||||    
T  46748958 aaaattttgaaaaaacgacatagttcaatgtaatcacaaatgtcagt 46748912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 34184677 - 34184722
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcag 100  Q
    |||||||||| ||||| | ||||||||||||||||||| |||||||    
T  34184677 aaaatcttgagaaaataatataattcaatgtaatcacatgtgtcag 34184722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 38078705 - 38078668
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  38078705 ttgaaaaaatcacataattcaatgtaattacaagtgtc 38078668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 17008001 - 17007965
Alignment:
Q  65 aaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||||| |||||||||||| |||||||||||||||||    
T  17008001 aaaaattacataattcaatataatcacaagtgtcagt 17007965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 32638537 - 32638565
Alignment:
Q  111 gacacgccttcaattagaagtgttgatgc 139  Q
    |||||||||||||||||||||||||||||    
T  32638537 gacacgccttcaattagaagtgttgatgc 32638565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 40686808 - 40686760
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagtat 103  Q
    ||||| |||| ||||||| ||||||||||||||||| ||||||| ||||    
T  40686808 aaaattttgataaaatgatataattcaatgtaatcataagtgtcggtat 40686760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 42386440 - 42386401
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  42386440 ttgaaaaaatg-cataattcaatgtaatcacaagggtcagt 42386401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 19369826 - 19369924
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcg-------gacacgccttcaattagaagtgttgatgcaacagag 146  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| || | ||||||       |||||||||||||| ||||||||   ||||||||||    
T  19369826 aaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgtcgacaccgagacacgccttcaatcagaagtgtccgtgcaacagag 19369924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 6751932 - 6751889
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  6751932 aaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 6751889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 9024220 - 9024165
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggacacg 116  Q
    |||| ||||||||||||||||||||||||| | |||||||| | ||||||||||||    
T  9024220 ttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtcggacacg 9024165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 12696339 - 12696394
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggacacg 116  Q
    |||||||||| |||||||||| |||||| |||||||||||| | ||||||||||||    
T  12696339 ttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgtcggacacg 12696394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 10031579 - 10031621
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgt 97  Q
    ||||| |||| ||||||||||||||||||||||||||||||||    
T  10031579 aaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 28715271 - 28715347
Alignment:
Q  21 gacacgggacacggcactgacactgtcacggataaaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| |||||||  || ||||||| ||||| ||| ||| ||||||||||||||||||||| |||||| |||||||||    
T  28715271 gacaccggacacgatacggacactgacacggctaataat-ttgaaaaaatgacataattcagtgtaattacaagtgtc 28715347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 785492 - 785449
Alignment:
Q  68 aatgacataattcaatgtaatcacaagtgtcagtatagtgtcgg 111  Q
    ||||||||||||||||||||||||||||||| || | |||||||    
T  785492 aatgacataattcaatgtaatcacaagtgtcggtgtcgtgtcgg 785449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 1334670 - 1334713
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| ||||||||| ||||||||||||||||||||||| ||||    
T  1334670 aaaattttgaaaaaaggacataattcaatgtaatcacaaatgtc 1334713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 7942277 - 7942324
Alignment:
Q  68 aatgacataattcaatgtaatcacaagtgtcagtatagtgtcggacac 115  Q
    ||||||||||||||||||||||||| ||||||||   |||||||||||    
T  7942277 aatgacataattcaatgtaatcacatgtgtcagtgctgtgtcggacac 7942324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 26402721 - 26402687
Alignment:
Q  64 aaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||||||||||||||||| ||||||||||||||||    
T  26402721 aaaaaatgacataattcagtgtaatcacaagtgtc 26402687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 602653 - 602710
Alignment:
Q  57 aatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggaca 114  Q
    |||||| ||| |||||||||||||||| |||||||| |||||||| | |||| |||||    
T  602653 aatcttaaaacaatgacataattcaatataatcacatgtgtcagtgtcgtgttggaca 602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 10157999 - 10158036
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  10157999 ttgagaaaatgacataattcaatgtaatcacatgtgtc 10158036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 4859157 - 4859117
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||| ||||||||||||| ||||||||||||| ||||||||    
T  4859157 ttgagaaaatgacataatccaatgtaatcacacgtgtcagt 4859117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 31384935 - 31384975
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||||||||| |||||||||| |||||| ||||||||||||    
T  31384935 ttgaaaaaatcacataattcagtgtaattacaagtgtcagt 31384975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 14338533 - 14338490
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||    
T  14338533 aaaattttgaaaaaatgacataattcaatgtaatcacaaatgtc 14338490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 12704714 - 12704672
Alignment:
Q  47 cacggataaaaatcttgaaaaaatgacataattcaatgtaatca 90  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||    
T  12704714 cacggataataat-ttgaaaaaatgacataattcaatgtaatca 12704672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 14832114 - 14832164
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcgg 111  Q
    |||||||||| |||||| |||||||||| |||||||||||| | |||||||    
T  14832114 ttgaaaaaatcacataactcaatgtaattacaagtgtcagtgtcgtgtcgg 14832164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 10954967 - 10955004
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  10954967 ttgaaaaaatcacataattcagtgtaatcacaagtgtc 10955004  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 13005444 - 13005477
Alignment:
Q  64 aaaaaatgacataattcaatgtaatcacaagtgt 97  Q
    |||||||||||||||||||| |||||||||||||    
T  13005444 aaaaaatgacataattcaatataatcacaagtgt 13005477  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 20503480 - 20503517
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  20503480 ttgaaaaaatgacataattcagtgtaattacaagtgtc 20503517  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 43586055 - 43586012
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  43586055 aaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 43586012  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 14450845 - 14450799
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtgtcagt 14450799  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 13501117 - 13501085
Alignment:
Q  66 aaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||||||||||||||||||||||||||||||||    
T  13501117 aaaatgacataattcaatgtaatcacaagtgtc 13501085  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 97
Target Start/End: Original strand, 24067273 - 24067304
Alignment:
Q  66 aaaatgacataattcaatgtaatcacaagtgt 97  Q
    ||||||||||||||||||||||||||||||||    
T  24067273 aaaatgacataattcaatgtaatcacaagtgt 24067304  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 44984699 - 44984657
Alignment:
Q  56 aaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    |||| |||||||||||| |||||||||||| ||||||||||||    
T  44984699 aaattttgaaaaaatgatataattcaatgtgatcacaagtgtc 44984657  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 37402125 - 37402088
Alignment:
Q  64 aaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  37402125 aaaaaatgacataattcaatgtaatcatatgtgtcagt 37402088  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 18570987 - 18571027
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    |||| ||||||||||||||||||||||||| | ||||||||    
T  18570987 ttgagaaaatgacataattcaatgtaatcatatgtgtcagt 18571027  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 43065573 - 43065613
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagt 101  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  43065573 ttgaaaaaatgacataactaaatgtaatcacatgtgtcagt 43065613  T

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Target: scaffold0314 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 8957 - 9000
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 98  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||    
T  8957 aaaattttgagaaaatgacataattcaacgtaatcacaagtgtc 9000  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 20187 - 20237
Alignment:
Q  61 ttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcgg 111  Q
    |||||||||| |||||||||| |||||| |||||||||||| | |||||||    
T  20187 ttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcgg 20237  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 18158 - 18098
Alignment:
Q  55 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagtatagtgtcggacac 115  Q
    ||||| |||| ||||| |||||||||||||||||| |||||||  || | |||||||||||    
T  18158 aaaattttgagaaaataacataattcaatgtaatcgcaagtgttggtgttgtgtcggacac 18098  T

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