View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12931_low_9 (Length: 606)
Name: NF12931_low_9
Description: NF12931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12931_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 166 - 537
Target Start/End: Original strand, 22957593 - 22957958
Alignment:
| Q |
166 |
ttagagccagtctaaactattgagtcatttatatatgtgcaaaaacgagttaaacatttaaaaattgtaaagaagtctcttcaatttgtcttctaataaa |
265 |
Q |
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| T |
22957593 |
ttagagccagtataaactattgagtcatttatatatgtgcaaaaacgagttaaacacttgaaaattgtaaag---tctcttcaatttgtcttctaataaa |
22957689 |
T |
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| Q |
266 |
cttcaactatcaactcattatcgtattgtatcgggctcttttgagccaagagtactctttgagtattcatttgcaaaaatacatcatgaaccctaaccct |
365 |
Q |
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| T |
22957690 |
cttcaactatcaactcattatcgtattgcatccggctcttttgagccaaga---ctctttgagtcttcatttgcaaaaatacatcatgaaccctaaccct |
22957786 |
T |
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| Q |
366 |
tcttcttttcaatgtgtttgttgtaaatttctaacgaggagttacactttcaaatctatgacatcctctgattttgacattaatcatagtacttttcaag |
465 |
Q |
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| T |
22957787 |
tcttcttttcaatgtgtttgttgtaaatttctaacgaggagttacactctcaaatctatgacatcctctgattttgacattgattacagtactgttcaag |
22957886 |
T |
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| Q |
466 |
ccatctacattgttgattatctcgcagcattgtcttcgtggtgcctattaatccaaatttcaatctagttag |
537 |
Q |
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| T |
22957887 |
ccatctacattgttgattatctcgcagcattgtcttcttggtgcctattaatccaaatttcattctagttag |
22957958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 22957441 - 22957523
Alignment:
| Q |
14 |
gagatgaaacacttcataaatctcatgatagtttaagtcacaacacagtccaggttagcaaaatatgttctacaagttctacc |
96 |
Q |
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| T |
22957441 |
gagatgaaacacttcataaatctcatgatagtttaagtcacaacacagtctaggttagcaaaatatgtactacaagttctacc |
22957523 |
T |
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