View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12932_high_11 (Length: 265)
Name: NF12932_high_11
Description: NF12932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12932_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 6414377 - 6414613
Alignment:
| Q |
13 |
aaaataccatttgagatttccaatcattagataaatnnnnnnnn----tgattgtcatcaacgatagagaatggagtattctgagctattaactccaaca |
108 |
Q |
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| T |
6414377 |
aaaataccatttgagatttccaatcattagataaataaaaaaaaaaaatgattgtcatcaacaatagagaatggagtattctgagctattaactccaaca |
6414476 |
T |
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| Q |
109 |
atgtctaaagataccaatatgcgatgaaatggaataaacaagataaactatcattctgcaacacaaattcacaatgaaaacgcctattgtaattgtcttt |
208 |
Q |
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| T |
6414477 |
atgtctgaagataccaatatgcgatgaaatggaataaacaagataaactatcattctgcaacacaaattcacaatgaaaacgcctattg----tgtcttt |
6414572 |
T |
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| Q |
209 |
gaatttctttgtttgtttctatgcgtggttagaagaattca |
249 |
Q |
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| T |
6414573 |
gaatttctttgtttgtttctatgcgtggttagaagaattca |
6414613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 6448912 - 6448872
Alignment:
| Q |
168 |
aacacaaattcacaatgaaaacgcctattgtaattgtcttt |
208 |
Q |
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| T |
6448912 |
aacacaaattcacaacaaaaacgcctattgtaatagtcttt |
6448872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 47597541 - 47597585
Alignment:
| Q |
201 |
ttgtctttgaatttctttgtttgtttctatgcgtggttagaagaa |
245 |
Q |
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| T |
47597541 |
ttgtctttgaatttctttgtttgtttcaacgcgtggttagtagaa |
47597585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 1622349 - 1622404
Alignment:
| Q |
75 |
gagaatggagtattctgagctattaactccaacaatgtctaaagataccaatatgc |
130 |
Q |
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| T |
1622349 |
gagaatggagtattgtgagctaataattgcaacaatttataaagataccaatatgc |
1622404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 25564059 - 25564015
Alignment:
| Q |
201 |
ttgtctttgaatttctttgtttgtttctatgcgtggttagaagaa |
245 |
Q |
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| T |
25564059 |
ttgtttttgaatttctttgtttgtttctacacgtggtcagaagaa |
25564015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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