View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12932_high_16 (Length: 245)

Name: NF12932_high_16
Description: NF12932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12932_high_16
NF12932_high_16
[»] chr3 (5 HSPs)
chr3 (90-230)||(4230405-4230544)
chr3 (90-230)||(4239920-4240059)
chr3 (93-230)||(4223444-4223578)
chr3 (117-229)||(4248826-4248938)
chr3 (12-43)||(4223363-4223394)
[»] chr5 (1 HSPs)
chr5 (164-208)||(20890222-20890266)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 4230405 - 4230544
Alignment:
Q  90 caatgtacaactacatactaaagacataaatttgaaaaggatgnnnnnnncatattaccaccactgctcttttcaatatgaaataggaaaagaaataaag 189  Q
    ||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  4230405 caatgtacaactacaaactaaagacataaatttgaaaaggatgagaaat-catattaccaccactgctcttttcaatatgaagtaagaaaagaaataaag 4230503  T
Q  190 tcatagcatacaaaaactttatagtcttagacatatttttt 230  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  4230504 tcatagcatacaaaaacattatagtcttagacatatttttt 4230544  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 4239920 - 4240059
Alignment:
Q  90 caatgtacaactacatactaaagacataaatttgaaaaggatgnnnnnnncatattaccaccactgctcttttcaatatgaaataggaaaagaaataaag 189  Q
    ||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  4239920 caatgtacaactacaaactaaagacataaatttgaaaaggatgagaaat-catattaccaccactgctcttttcaatatgaagtaagaaaagaaataaag 4240018  T
Q  190 tcatagcatacaaaaactttatagtcttagacatatttttt 230  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  4240019 tcatagcatacaaaaacattatagtcttagacatatttttt 4240059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 4223444 - 4223578
Alignment:
Q  93 tgtacaactacatactaaagacataaatttgaaaaggatgnnnnnnncatattaccaccactgctcttttcaatatgaaataggaaaagaaataaagtca 192  Q
    ||||||| |||| |||||||||||||||||||||||||||       ||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  4223444 tgtacaattacaaactaaagacataaatttgaaaaggatgaaaaaaacatatt---accactgctcttttcaatatgaaataggaaaagaaataaagtca 4223540  T
Q  193 tagcatacaaaaactttatagtcttagacatatttttt 230  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  4223541 tagcatacaaaaactttatagtcatagacatatttttt 4223578  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 4248826 - 4248938
Alignment:
Q  117 aaatttgaaaaggatgnnnnnnncatattaccaccactgctcttttcaatatgaaataggaaaagaaataaagtcatagcatacaaaaactttatagtct 216  Q
    ||||||||||||||||       ||||||||||||| || ||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||||| |    
T  4248826 aaatttgaaaaggatgagaataacatattaccaccattgttcttttcgataagaaataggaaaagaaataaagtgatagcatacaaaaattttatagttt 4248925  T
Q  217 tagacatattttt 229  Q
    |||||||||||||    
T  4248926 tagacatattttt 4248938  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 4223363 - 4223394
Alignment:
Q  12 atcatcaactgttttacaatcaattaaagctg 43  Q
    ||||||||||||||||||||||||||||||||    
T  4223363 atcatcaactgttttacaatcaattaaagctg 4223394  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 20890222 - 20890266
Alignment:
Q  164 aatatgaaataggaaaagaaataaagtcatagcatacaaaaactt 208  Q
    |||| |||||||||||||||||||| ||||| |||||| ||||||    
T  20890222 aataagaaataggaaaagaaataaaatcataacatacacaaactt 20890266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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