View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12932_high_6 (Length: 389)
Name: NF12932_high_6
Description: NF12932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12932_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 2019102 - 2019462
Alignment:
| Q |
20 |
cgacaagccaggtacattcattaccagtattgtgcagcctccactcttattcatggttacgcatgctactatgttg-atttcagtatagaaatatagcct |
118 |
Q |
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| T |
2019102 |
cgacaagccaggtacattcattaccagtattgtgcagcctccactcttattcatggttacgcatgctactatgttgtattgcagtatagaaatatagcct |
2019201 |
T |
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| Q |
119 |
attgtagctgtgtatagcctgtagaataacagctctcacatctagctagtctaagagagatttctaactaacggaatcaaatcagttagagggatttgac |
218 |
Q |
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| T |
2019202 |
attgtagctgtgtatagcctgtagaataacagctctcacatctacctagtctaagagagatttctaactaactgaatcaaatcagttagagggatttgac |
2019301 |
T |
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| Q |
219 |
ctctataaataccaatcatcctgtaatcattactaaacgacgatcaatgaagaatattcaaattccc-ctcatattctctttcatatctatttctcaaag |
317 |
Q |
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| T |
2019302 |
ctctataaataccaatcatcctgtaatcattactaaacgttgatcaatgaagaatattcagattccctctcatattctctttcatatctatttctcaaag |
2019401 |
T |
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| Q |
318 |
ataacttgggtttcaattatatggatcattgattatttaattgatactggtgttccttctt |
378 |
Q |
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| T |
2019402 |
ataacttgggtttcaattatatggatcattgattatttaattgatactggtgttccttctt |
2019462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 2035922 - 2035978
Alignment:
| Q |
20 |
cgacaagccaggtacattcattaccagtattgtgcagcctccactcttattcatggt |
76 |
Q |
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| T |
2035922 |
cgacaagccaggtacattcattacgagtattgtgcagtctccactttcattcatggt |
2035978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 1990175 - 1990230
Alignment:
| Q |
23 |
caagccaggtacattcattaccagtattgtgcagcctccactcttattcatggtta |
78 |
Q |
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| T |
1990175 |
caagccaggtacattcattacgagtattgtgcagtctccactttcattcatggtta |
1990230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 378
Target Start/End: Original strand, 1990425 - 1990496
Alignment:
| Q |
308 |
tttctcaaagataacttgggtttcaattatatggatcattgattatttaa-ttgatactggtgttccttctt |
378 |
Q |
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| T |
1990425 |
tttctcaaagatagcttaggtttctactatattgaacatcgattatttaacttgatactggtgttccttctt |
1990496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 2021734 - 2021778
Alignment:
| Q |
20 |
cgacaagccaggtacattcattaccagtattgtgcagcctccact |
64 |
Q |
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| T |
2021734 |
cgacaagcaaggtacattcattacgagtattgtgctgcctccact |
2021778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 2021893 - 2021940
Alignment:
| Q |
183 |
taactaacggaatcaaatcagttagagggatttgacctctataaatac |
230 |
Q |
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| T |
2021893 |
taactaactgaatcaaataagttagagggatttgacctttatagatac |
2021940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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