View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12932_high_7 (Length: 361)
Name: NF12932_high_7
Description: NF12932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12932_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 46248109 - 46248454
Alignment:
| Q |
1 |
taccagttgagccaaggttacccctcgtataatcaactagtatgacagcaattacctttatgcggcccggtgtgccaatgacaatatcgacacctctctc |
100 |
Q |
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| T |
46248109 |
taccagttgagccaaggttacccctcgtataatcaactagtatgacagcaattacctttatgcggcccggtgtgccaatgacaatatcgacacctctctc |
46248208 |
T |
|
| Q |
101 |
aagcttgatttcttgagctttatatggagctcctccatataaacaacaagaagtcaatcccattgccccaccataaacttcaaaatcagcattcacctaa |
200 |
Q |
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| T |
46248209 |
aagcttgatttcttgagctttatatggagctcctccatataaacaacaagaagtcaatcccattgccccaccataaacttcaaaatcagcattcacctaa |
46248308 |
T |
|
| Q |
201 |
tgcacaacaccccacacacagtaagcaactgaataacattcagcaagcaatgcaagcacaactgcaaattgtggttgtagctacctgacaggccaactcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
46248309 |
tgcacaacaccccacacacagtaagcaactgaataacattcagcaagcaatgcaagcacaattacaaattgtggttgtagctacctgacaggccaactcc |
46248408 |
T |
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| Q |
301 |
ctcgtaggtaaaagcacaagaacacttggtttcggaggccctccat |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46248409 |
ctcgtaggtaaaagcacaagaacacttggtttcggaggccctccat |
46248454 |
T |
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