View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12932_low_1 (Length: 617)

Name: NF12932_low_1
Description: NF12932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12932_low_1
NF12932_low_1
[»] chr5 (10 HSPs)
chr5 (273-604)||(10219117-10219447)
chr5 (421-516)||(13853932-13854027)
chr5 (265-338)||(10102729-10102802)
chr5 (6-66)||(11050953-11051013)
chr5 (278-339)||(10212402-10212463)
chr5 (285-341)||(10105811-10105867)
chr5 (290-341)||(10109224-10109275)
chr5 (290-341)||(10209863-10209914)
chr5 (290-341)||(12104686-12104737)
chr5 (278-340)||(13855940-13856002)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 273 - 604
Target Start/End: Original strand, 10219117 - 10219447
Alignment:
Q  273 aagctgaggtcttttcattttataagtaagcagcatagtttagtttataaattggtcgatgtgggacttgcactttggtggaagtgagtgatttttata- 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||    ||||||||     
T  10219117 aagctgaggtcttttcattttataagtaagcagcatagtttagtttatgaattggttgatgtgggacttgcagtttggtggaagtga---ttttttatat 10219213  T
Q  372 --tggtgatcgatcacaacaactgaaccagatgaaataacatagtatc--tgagaatgaatgagaagatagaagaactatggagagaagtacgagaatta 467  Q
      ||||||||||||   |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10219214 ggtggtgatcgatc---acaactgaaccagatgaaataacatagtatctgtgagaatgaatgagaagatagaagaactatggagagaagtacgagaatta 10219310  T
Q  468 agtctaggaagcaacagaagcatagaacgtttagaatcagcaccaacaccactccaattccatagaaacttcatcactccaaacaaaccttgcatcatct 567  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10219311 agtctaggaagcaaaagaagcatagaacgtttagaatcagcaccaacaccactccaattccatagaaacttcatcactccaaacaaaccttgcatcatct 10219410  T
Q  568 ccaactccatctcccattggccctccctctctctctg 604  Q
    |||||||||||||||||||||||||||||||||||||    
T  10219411 ccaactccatctcccattggccctccctctctctctg 10219447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 421 - 516
Target Start/End: Complemental strand, 13854027 - 13853932
Alignment:
Q  421 gaatgaatgagaagatagaagaactatggagagaagtacgagaattaagtctaggaagcaacagaagcatagaacgtttagaatcagcaccaacac 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  |||||||||    
T  13854027 gaatgaatgagaagatagaagaactatggagagaagtacgagaattaagtttaggaagcaacagaaccatagaacgtttagaatctccaccaacac 13853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 10102802 - 10102729
Alignment:
Q  265 attttgacaagctgaggtcttttcattttataagtaagcagcatagtttagtttataaattggtcgatgtggga 338  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10102802 attttaacaagctgaggtcttttcgttttataagtaagcagcatagtttagtttatgaattggtcgatgtggga 10102729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 11050953 - 11051013
Alignment:
Q  6 ctttaaattcatgatgatgatcaatataaatatggacgtgattgattatttgaaaaagaat 66  Q
    |||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  11050953 cttttaattcatgatgatgatcaatataaatatgtacgtgaatggttatttgaaaaagaat 11051013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 10212402 - 10212463
Alignment:
Q  278 gaggtcttttcattttataagtaagcagcatagtttagtttataaattggtcgatgtgggac 339  Q
    |||||| |||||||||||| || | ||||||||||||||||||  |||||| ||||||||||    
T  10212402 gaggtcatttcattttatatgtgatcagcatagtttagtttatgcattggtagatgtgggac 10212463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 10105867 - 10105811
Alignment:
Q  285 tttcattttataagtaagcagcatagtttagtttataaattggtcgatgtgggactt 341  Q
    |||||||||||| | |||| |||||||||||||||| || ||| |||||||||||||    
T  10105867 tttcattttatatgaaagctgcatagtttagtttatgaactgggcgatgtgggactt 10105811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 10109275 - 10109224
Alignment:
Q  290 ttttataagtaagcagcatagtttagtttataaattggtcgatgtgggactt 341  Q
    ||||||| | |||| |||||||||||||||| |||||| |||||||||||||    
T  10109275 ttttatatgcaagctgcatagtttagtttatgaattgggcgatgtgggactt 10109224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 10209863 - 10209914
Alignment:
Q  290 ttttataagtaagcagcatagtttagtttataaattggtcgatgtgggactt 341  Q
    ||||||| | |||| |||||||||||||||| |||||| |||||||||||||    
T  10209863 ttttatatgcaagctgcatagtttagtttatgaattgggcgatgtgggactt 10209914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 12104686 - 12104737
Alignment:
Q  290 ttttataagtaagcagcatagtttagtttataaattggtcgatgtgggactt 341  Q
    ||||||| || ||| ||||| |||||||||| ||||||||||||||||||||    
T  12104686 ttttatatgtgagctgcataatttagtttatgaattggtcgatgtgggactt 12104737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 13856002 - 13855940
Alignment:
Q  278 gaggtcttttcattttataagtaagcagcatagtttagtttataaattggtcgatgtgggact 340  Q
    |||||| |||| ||||||| || | | |||||||||||||||| ||||||| |||||||||||    
T  13856002 gaggtcctttctttttatatgtgaactgcatagtttagtttatgaattggttgatgtgggact 13855940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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