View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12932_low_2 (Length: 614)
Name: NF12932_low_2
Description: NF12932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12932_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 288 - 599
Target Start/End: Complemental strand, 42037072 - 42036761
Alignment:
| Q |
288 |
cactccactcccgttggtcatggcttaggagaatcacttcttaaacgacaagcaagaatcaatgatgcatgttccttactcattcaatttggtttccatc |
387 |
Q |
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| T |
42037072 |
cactccactcccgttggtcatggcttaggagaatcacttcttaaacgacaagcaagaatcaatgatgcatgttccttactcattcaattcggtttccatc |
42036973 |
T |
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| Q |
388 |
aagggatttttaccatcaacaatcttcttagccaaggctacaccgacgatgactttctggagcttatcgagccaattacttccataacagatttggagga |
487 |
Q |
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| T |
42036972 |
aagggatttttaccatcaacaatcttcttagccaaggctacaccgacgatgactttctggagcttatcaagccaattacttccataacagatttggagga |
42036873 |
T |
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| Q |
488 |
attaagatatctttacaacataacttgtcaatataaccattttccacagaatgatttgcccaagttcatcaacgttatgaagtggttgaatggtactcaa |
587 |
Q |
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| T |
42036872 |
attaagatatctttacaacataacttgtaaatataaccattttccacaaaatgatttgcccaagttcatcaacgttatgaagtggttgaatggtactcaa |
42036773 |
T |
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| Q |
588 |
caaggtaagaaa |
599 |
Q |
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| T |
42036772 |
caaggtaagaaa |
42036761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 59 - 287
Target Start/End: Original strand, 35588819 - 35589056
Alignment:
| Q |
59 |
tgtaaagaaagtatgcagagagcaaattgatagaagtttttgttatgtatattgatgaataaatcacag---------ctgtacaagtattaacagaaaa |
149 |
Q |
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| T |
35588819 |
tgtaaagaaagtatgcagagagcaaattgatagaagtttttgttatgtatattgatgaataaatcacaggttaatatactgtacaagtattaacagaaaa |
35588918 |
T |
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| Q |
150 |
accaaactaagaggaagctaaactaatgtataggaaagctaaactaattgataggaacaataaggattaggatgagaacaacaaggatcagtagcaaatt |
249 |
Q |
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| T |
35588919 |
accaaactaagaggaagctgaactaatgtataggaaagctaaactaattgataggaacaataaggattaggatgagaacaacaaggaccagtagcaaatt |
35589018 |
T |
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| Q |
250 |
gtaactaattgtgagatattctagtttagtcgataaca |
287 |
Q |
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| T |
35589019 |
gtaactaattgtgagatattctagtttagtcgataaca |
35589056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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