View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12932_low_3 (Length: 581)
Name: NF12932_low_3
Description: NF12932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12932_low_3 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 525; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 20 - 572
Target Start/End: Complemental strand, 6736433 - 6735881
Alignment:
| Q |
20 |
ctctggtcgtgtaatggtcagatagattagacgaccaaccagtcttctgtaacgcggtggatttgcgaaaattggacctgcatccaaagcaagtttctga |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6736433 |
ctctggtcgtgtaatggtcagatagattagacgaccaaccagtcttctgtaacgcggcggatttgcgaaaattggacctgcatccaaagcaagtttctga |
6736334 |
T |
|
| Q |
120 |
ttttgctccattggaaatgaggatggtttgcagtcaagcattttgcactcgcttaaaatatctagagtgtattttcgttggcaaatgaatagcccagttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6736333 |
ttttgctccattggaaatgaggatggtttgcagtcaagcattttgcactcgcttaaaatatctagagtgtattttcgttggcaaatgaatagcccagttg |
6736234 |
T |
|
| Q |
220 |
ctcctcgcgctaactcaagacctaggaaatattttagagatccaaggtctttcatgtgaaaacactgctttagatattgcttgaatttattgcatgtaga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6736233 |
ctcctcgcgctaactcaagacctaggaaatattttagagatccaaggtccttcatgtgaaaacactgctttagatattgcttgaatttgttgcatgtaga |
6736134 |
T |
|
| Q |
320 |
gctattatttcctgcaactaccagatcgtccacatacactaaaacagccatgaatttgtcttcttcagtgtaagtgaataaactatgatccgcgtcagat |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
6736133 |
gctattatttcctgcaactaccagatcgtccacatacactaaaacagccatgaatttgtcttcttcagtgtaagtgaataagctatgatccgcatcagat |
6736034 |
T |
|
| Q |
420 |
tcttggatcccatagtttatgagtgattgagagagttttgagtaccaattccgcaaagcttgtttcaacccatacaaggactttctcagacggcaaacca |
519 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6736033 |
tcttggaacccatagtttatgagtgattgagagagttttgagtaccaattccgcgaagcttgtttcaacccatacaaggactttctcagacggcaaacca |
6735934 |
T |
|
| Q |
520 |
ttcctttcttgggaacttggtatccatcgggaacttgcatgtatacttcttct |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6735933 |
ttcctttcttgggaacttggtatccatcgggaacttgcatgtatacttcttct |
6735881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 431 - 572
Target Start/End: Original strand, 6737291 - 6737432
Alignment:
| Q |
431 |
atagtttatgagtgattgagagagttttgagtaccaattccgcaaagcttgtttcaacccatacaaggactttctcagacggcaaaccattcctttcttg |
530 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6737291 |
atagtttatgagtgattgagagagttttgagtaccaattccgcgaagcttgtttcaacccatacaaggactttctcagacggcaaaccattcctttcttg |
6737390 |
T |
|
| Q |
531 |
ggaacttggtatccatcgggaacttgcatgtatacttcttct |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6737391 |
ggaacttggtatccatcgggaacttgcatgtatacttcttct |
6737432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 9587838 - 9587723
Alignment:
| Q |
93 |
ggacctgcatccaaagcaagtttctgattttgctccattggaaatgaggatggtttgcagtcaagcattttgcactcgcttaaaatatctagagtgtatt |
192 |
Q |
| |
|
||||||| ||| | ||||||||| ||||| | |||||||||||||| ||||||||||| || |||||||||||||| |||| ||||| ||||| |||| |
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|
| T |
9587838 |
ggacctgaatcaagagcaagtttttgattctcttccattggaaatgaagatggtttgcaatctagcattttgcactcagttaagatatcaagagtatatt |
9587739 |
T |
|
| Q |
193 |
ttcgttggcaaatgaa |
208 |
Q |
| |
|
||||||| || ||||| |
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|
| T |
9587738 |
ttcgttgacatatgaa |
9587723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 20 - 572
Target Start/End: Original strand, 52078475 - 52079027
Alignment:
| Q |
20 |
ctctggtcgtgtaatggtcagatagattagacgaccaaccagtcttctgtaacgcggtggatttgcgaaaattggacctgcatccaaagcaagtttctga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52078475 |
ctctggtcgtgtaatggtcagatagattagacgaccaaccagtcttctgtaacgcggcggatttgcgaaaattggacctgcatccaaagcaagtttctga |
52078574 |
T |
|
| Q |
120 |
ttttgctccattggaaatgaggatggtttgcagtcaagcattttgcactcgcttaaaatatctagagtgtattttcgttggcaaatgaatagcccagttg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52078575 |
ttttgctccattggaaatgaggatggtttgcagtcaagcattttgcactagcttaaaatatctagagtgtattttcgttggcaaatgaatagcccagttg |
52078674 |
T |
|
| Q |
220 |
ctcctcgcgctaactcaagacctaggaaatattttagagatccaaggtctttcatgtgaaaacactgctttagatattgcttgaatttattgcatgtaga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
52078675 |
ctcctcgcgctaactcaagacctaggaaatattttagagatccaaggtccttcatgtgaaaacactgctttagatattgcttgaatttgttgcatgtaga |
52078774 |
T |
|
| Q |
320 |
gctattatttcctgcaactaccagatcgtccacatacactaaaacagccatgaatttgtcttcttcagtgtaagtgaataaactatgatccgcgtcagat |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
52078775 |
gctattatttcctgcaactaccagatcgtccacatacactaaaacagccatgaatttgtcttcttcagtgtaagtgaataagctatgatccgcatcagat |
52078874 |
T |
|
| Q |
420 |
tcttggatcccatagtttatgagtgattgagagagttttgagtaccaattccgcaaagcttgtttcaacccatacaaggactttctcagacggcaaacca |
519 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52078875 |
tcttggaacccatagtttatgagtgattgagagagttttgagtaccaattccgcgaagcttgtttcaacccatacaaggactttctcagacggcaaacca |
52078974 |
T |
|
| Q |
520 |
ttcctttcttgggaacttggtatccatcgggaacttgcatgtatacttcttct |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52078975 |
ttcctttcttgggaacttggtatccatcgggaacttgcatgtatacttcttct |
52079027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 26645830 - 26645900
Alignment:
| Q |
126 |
tccattggaaatgaggatggtttgcagtcaagcattttgcactcgcttaaaatatctagagtgtattttcg |
196 |
Q |
| |
|
||||| ||||||| ||||||||||| || | |||||||||||| ||||||||||| || || |||||||| |
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|
| T |
26645830 |
tccatcggaaatgtcgatggtttgcaatctaacattttgcactcacttaaaatatcaagggtatattttcg |
26645900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 24 - 538
Target Start/End: Complemental strand, 4610617 - 4610119
Alignment:
| Q |
24 |
ggtcgtgtaatggtcagatagattagacgaccaaccagtcttctgtaacgcggtggatttgcgaaaattggacctgcatccaaagcaagtttctgatttt |
123 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||| || |||||| |||| || |||||||||||||| | | || ||||||||||| ||||||||||| |
|
|
| T |
4610617 |
ggtcgtgtaatggtcatatagattagatggccaaacaatcttctataacaaggcagatttgcgaaaattaggcatgtatccaaagcaactttctgatttt |
4610518 |
T |
|
| Q |
124 |
gctccattggaaatgaggatggtttgcagtcaagcattttgcactcgcttaaaatatctagagtgtattttcgttggcaaatgaatagcccagttgctcc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4610517 |
gctccattggaaatgaggatggtttgca---------------ctcgcttaaaatatctaaaatgtattttcgttggcaaatgaattacccagttgctcc |
4610433 |
T |
|
| Q |
224 |
tcgcgctaactcaagacctaggaaatattttagagatccaaggtctttcatgtgaaaacactgctttagatattgcttgaatttattgcatgtagagcta |
323 |
Q |
| |
|
| | |||| | ||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||| |||| ||||||||| || |||||||||||| |
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|
| T |
4610432 |
ttgtgctaggtaaagacctaggaaatattttagagctccaaggtccttcatgtgaaaatactg-tttaggtatttcttgaatttgtttcatgtagagcta |
4610334 |
T |
|
| Q |
324 |
ttatttcctgcaactaccagatcgtccacatacactaaaacagccatgaatttgtcttcttcagtgtaagtgaataaactatgatccgcgtcagattctt |
423 |
Q |
| |
|
||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||| | ||||| |||| |
|
|
| T |
4610333 |
ttatttcctacaattaccagatcgtccagatacactaaaacagccatgaattggtcttctttaatataagtgaataaactatgatccacatcagactctt |
4610234 |
T |
|
| Q |
424 |
ggatcccatagtttatgagtgattgagagagttttgagtaccaattccgcaaagcttgtttcaacccatacaaggactttctcagacggcaaaccattcc |
523 |
Q |
| |
|
||| ||||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||| ||||| |
|
|
| T |
4610233 |
ggaagccataatttataagtgattgaaagagttttgagtaccaatttttggaagcttgtttcaacccatacgaggactttctcagacgacaaataattcc |
4610134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 286
Target Start/End: Original strand, 33794485 - 33794654
Alignment:
| Q |
117 |
tgattttgctccattggaaatgaggatggtttgcagtcaagcattttgcactcgcttaaaatatctagagtgtattttcgttggcaaatgaatagcccag |
216 |
Q |
| |
|
||||| ||||||||||| || | || |||||||| |||||||| || || || ||||| ||||| ||||||||||| || || || || |||||| |
|
|
| T |
33794485 |
tgattctgctccattgggaaagtagagggtttgcaatcaagcatcttacattcatccaaaatgtctagcgtgtattttcgctgacacataaacagcccat |
33794584 |
T |
|
| Q |
217 |
ttgctcctcgcgctaactcaagacctaggaaatattttagagatccaaggtctttcatgtgaaaacactg |
286 |
Q |
| |
|
|||||||||| || | || |||||||| |||||||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
33794585 |
ttgctcctcgtgcgagttctagacctagaaaatatttcagaggcccaaggtctttcatatgaaaacactg |
33794654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 286
Target Start/End: Original strand, 33720988 - 33721157
Alignment:
| Q |
117 |
tgattttgctccattggaaatgaggatggtttgcagtcaagcattttgcactcgcttaaaatatctagagtgtattttcgttggcaaatgaatagcccag |
216 |
Q |
| |
|
||||| ||||||||||| || | || |||||||| |||||||| || || || ||||| ||||| ||||||||||| || || || || | |||| |
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|
| T |
33720988 |
tgattctgctccattgggaaagtagagggtttgcaatcaagcatcttacattcatccaaaatgtctagcgtgtattttcgctgacacataaacaacccat |
33721087 |
T |
|
| Q |
217 |
ttgctcctcgcgctaactcaagacctaggaaatattttagagatccaaggtctttcatgtgaaaacactg |
286 |
Q |
| |
|
|||||||||| || | || |||||||| |||||||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
33721088 |
ttgctcctcgtgcgagttctagacctagaaaatatttcagaggcccaaggtctttcatatgaaaacactg |
33721157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 20894231 - 20894179
Alignment:
| Q |
158 |
cattttgcactcgcttaaaatatctagagtgtattttcgttggcaaatgaata |
210 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
20894231 |
cattttgcactcacttaagatatcaagagtgtattttcgttggcacatgaata |
20894179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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