View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12932_low_5 (Length: 535)

Name: NF12932_low_5
Description: NF12932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12932_low_5
NF12932_low_5
[»] chr4 (7 HSPs)
chr4 (272-481)||(47293433-47293642)
chr4 (1-274)||(47293673-47293966)
chr4 (302-510)||(56208520-56208728)
chr4 (294-481)||(55705858-55706045)
chr4 (314-458)||(45876737-45876881)
chr4 (325-458)||(45858817-45858950)
chr4 (305-476)||(54304200-54304377)
[»] chr8 (2 HSPs)
chr8 (295-508)||(7972058-7972271)
chr8 (301-505)||(7961694-7961898)
[»] chr5 (3 HSPs)
chr5 (314-458)||(35854542-35854686)
chr5 (294-456)||(10521303-10521465)
chr5 (382-458)||(35802504-35802580)
[»] chr2 (1 HSPs)
chr2 (325-456)||(24357457-24357588)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 272 - 481
Target Start/End: Complemental strand, 47293642 - 47293433
Alignment:
Q  272 tcaggaagattcggactagggattgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgata 371  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293642 tcaggaagattcggactagggattgagcgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgata 47293543  T
Q  372 gtccaccaatagcatcaaccaaaccatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatct 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293542 gtccaccaatagcatcaaccaaaccatgagatactgcgtccttactggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatct 47293443  T
Q  472 ggaaagagcc 481  Q
    ||||||||||    
T  47293442 ggaaagagcc 47293433  T

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Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 47293966 - 47293673
Alignment:
Q  1 acagatgcaaaagtaagaaccaatgtgcttaagatggtgaataatgcagggagaaaacttaggaaaattgtttataataagctatcataatagcaa-aaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  47293966 acagatgcaaaagtaagaaccaatgtgcttaagatggtgaatagtgcagggagaaaacttaggaaaattgtttataataagctatcataatagcaaaaaa 47293867  T
Q  100 ataaaacaaannnnnnnnnattcaaagttgaatttctacctcctaagctacttgacaaaaataaaataaaatctcacatggttccatccatccgcagtgg 199  Q
    |||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  47293866 ataaaacaattttttttttattcaaagttgaatttctacctcctaagctacttgacaaaaataaaataaaatctcgcatggttccatccatccgcaatgg 47293767  T
Q  200 aac-------------------tccctccatccaactagagaatagccaatagccaatggagctccattacaatgggcccagaccctcccatca 274  Q
    |||                   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47293766 aactccattagaatgggcaaagtccctccatccaacgagagaatagccaatagccaatggagctccattacaatgggcccagaccctcccatca 47293673  T

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Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 302 - 510
Target Start/End: Original strand, 56208520 - 56208728
Alignment:
Q  302 tccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgag 401  Q
    ||||||| ||| || ||| ||| ||||||||||   |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |||    
T  56208520 tccacaacagtaacatgtttgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagag 56208619  T
Q  402 atactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaaatcgtat 501  Q
    ||| ||| || ||||||||| ||| ||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||||| || |    
T  56208620 atagtgcatctttaccggtctaaaccctcccctgtgcaacctcttccatctcatctatagtcattgatctggaaagagccgcattatctcgaaattgttt 56208719  T
Q  502 atacatatg 510  Q
    ||| |||||    
T  56208720 ataaatatg 56208728  T

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Target: chr4; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 294 - 481
Target Start/End: Complemental strand, 55706045 - 55705858
Alignment:
Q  294 ttgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaa 393  Q
    ||||| ||||||||| | | |||| |||||||||||||||||| || ||||||||||  ||||||||||| |||||||  ||||||||||||||||||||    
T  55706045 ttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaa 55705946  T
Q  394 accatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcc 481  Q
    |||||||||| ||||||| ||||||||||||| ||| || || ||||||||||||||||||||||| ||||| |||||||||||||||    
T  55705945 accatgagatgctgcgtctttaccggtccaaaccctcccatgcgcaacctcttccatcttgtctatagtcatagatctggaaagagcc 55705858  T

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Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 314 - 458
Target Start/End: Original strand, 45876737 - 45876881
Alignment:
Q  314 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 413  Q
    |||||||||| |||||||||||| || ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||| |||| ||||    
T  45876737 acctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatcct 45876836  T
Q  414 taccggtccaaatccttccctgtgcaacctcttccatcttgtcta 458  Q
    |||||||||||| ||| || |||||||||||||||||||||||||    
T  45876837 taccggtccaaaccctcccttgtgcaacctcttccatcttgtcta 45876881  T

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Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 325 - 458
Target Start/End: Original strand, 45858817 - 45858950
Alignment:
Q  325 ttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttaccggtccaa 424  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  425 atccttccctgtgcaacctcttccatcttgtcta 458  Q
    | |||  |||||||| ||||||||||||||||||    
T  45858917 accctctcctgtgcagcctcttccatcttgtcta 45858950  T

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Target: chr4; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 476
Target Start/End: Complemental strand, 54304377 - 54304200
Alignment:
Q  305 acaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagata 404  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||| || || |  || ||||||||||||||||||||  |||||     
T  54304377 acaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatg 54304278  T
Q  405 ctgcgtccttaccggtccaaa------tccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaa 476  Q
     |||||||||||| |||||||       ||| ||||||| |||||||||||| |||||||| ||||||||| ||||||    
T  54304277 ttgcgtccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 54304200  T

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Target: chr8 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 295 - 508
Target Start/End: Original strand, 7972058 - 7972271
Alignment:
Q  295 tgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaa 394  Q
    |||| ||||||||| ||| || |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||    
T  7972058 tgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaa 7972157  T
Q  395 ccatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaa 494  Q
    |||| ||||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||    
T  7972158 ccattagatactgcatctttaccggtccaaatcctcctctgtgcaacctcttccatcttgtctacagtcattgatctggaaagatccacatcatctcgaa 7972257  T
Q  495 atcgtatatacata 508  Q
    || || ||||||||    
T  7972258 attgtttatacata 7972271  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 301 - 505
Target Start/End: Original strand, 7961694 - 7961898
Alignment:
Q  301 ctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatga 400  Q
    |||||||| ||| || ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||| |    
T  7961694 ctccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcatta 7961793  T
Q  401 gatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaaatcgta 500  Q
    |||| ||| || ||||| |||||||| || || |||||||||||||||||||||||||| |||||| |||| ||||||||| ||| |||||||||| ||     
T  7961794 gatattgcatctttaccagtccaaattctcccttgtgcaacctcttccatcttgtctatagtcattaatcttgaaagagccgcatcatctcgaaattgtt 7961893  T
Q  501 tatac 505  Q
    |||||    
T  7961894 tatac 7961898  T

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Target: chr5 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 314 - 458
Target Start/End: Complemental strand, 35854686 - 35854542
Alignment:
Q  314 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||||||    
T  35854686 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtcct 35854587  T
Q  414 taccggtccaaatccttccctgtgcaacctcttccatcttgtcta 458  Q
    |||||||||||||||| || |||||||||| || |||||||||||    
T  35854586 taccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35854542  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 294 - 456
Target Start/End: Complemental strand, 10521465 - 10521303
Alignment:
Q  294 ttgagtgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaa 393  Q
    ||||| |||| |||||| | |||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||  ||||||||||||||||||||    
T  10521465 ttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaa 10521366  T
Q  394 accatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtc 456  Q
    ||| |||||| |||||||||| ||| |||||||||| |  |||| || ||||| |||||||||    
T  10521365 accttgagatgctgcgtccttcccgatccaaatcctcctatgtggaatctctttcatcttgtc 10521303  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 382 - 458
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  382 agcatcaaccaaaccatgagatactgcgtccttaccggtccaaatccttccctgtgcaacctcttccatcttgtcta 458  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| || |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 325 - 456
Target Start/End: Complemental strand, 24357588 - 24357457
Alignment:
Q  325 ttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtccttaccggtccaa 424  Q
    |||||||||||||||||||||||||||||| |||||||| || || || |||||||||||||||||||||||||| ||| |||| || ||||| ||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  425 atccttccctgtgcaacctcttccatcttgtc 456  Q
    |  || |||||||| ||||  |||||||||||    
T  24357488 actctcccctgtgctaccttctccatcttgtc 24357457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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