View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12932_low_9 (Length: 357)
Name: NF12932_low_9
Description: NF12932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12932_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 141 - 344
Target Start/End: Complemental strand, 43830841 - 43830638
Alignment:
| Q |
141 |
ggatcttcaatgctttcaatttattttatgataaaaatgcaatggaattttgcaggtgcaactttgagcaaggggtttaacagaggattagggacattgt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43830841 |
ggatcttcaatgctttcaatttattttatgataaaaatgcaatggaattttgcaggggcaactctgagcaaggggtttaacagaggattagggacattgt |
43830742 |
T |
|
| Q |
241 |
cagctggaggacttgctgttggagtgggagagttatcagcattggctggagaatgggaagaaattatagttattatcactacattcattgttggattctg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43830741 |
cagctggaggacttgctgttggagtgggagagttatcagcattggctggagaatgggaagaaattatagttattatcactacattcattgttggattctg |
43830642 |
T |
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| Q |
341 |
tgct |
344 |
Q |
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|||| |
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| T |
43830641 |
tgct |
43830638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 145 - 337
Target Start/End: Complemental strand, 43816614 - 43816422
Alignment:
| Q |
145 |
cttcaatgctttcaatttattttatgataaaaatgcaatggaattttgcaggtgcaactttgagcaaggggtttaacagaggattagggacattgtcagc |
244 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
43816614 |
cttcaacgttttcaatttattttatgataaaaatgcaatggaatttggcaggggcaactctgagcaaggggtttaacagaggattagggacattctcagc |
43816515 |
T |
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| Q |
245 |
tggaggacttgctgttggagtgggagagttatcagcattggctggagaatgggaagaaattatagttattatcactacattcattgttggatt |
337 |
Q |
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| T |
43816514 |
tggaggacttgctgttggaatgggagagttatcagcattggcaggagaatgggaagaagttatagttataatcagtacattcattgttggatt |
43816422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 152 - 337
Target Start/End: Complemental strand, 43823569 - 43823385
Alignment:
| Q |
152 |
gctttcaatttattttatgataaaaatgcaatggaattttgcaggtgcaactttgagcaaggggtttaacagaggattagggacattgtcagctggagga |
251 |
Q |
| |
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||||||||||||||| |||| ||||||||||| ||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||| |||||| |
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| T |
43823569 |
gctttcaatttatttc-tgatcaaaatgcaatgaaattttgcaggagcaactctgaacagagggtttaacagaggattagggacattgtcagccggagga |
43823471 |
T |
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| Q |
252 |
cttgctgttggagtgggagagttatcagcattggctggagaatgggaagaaattatagttattatcactacattcattgttggatt |
337 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |
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| T |
43823470 |
cttgctgtaggaatgggagagttatcagcattggctggagaatgggaagaagttatagtgattatcagtacattcattgttggatt |
43823385 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 43831706 - 43831567
Alignment:
| Q |
1 |
atgcaagagtaatatttgcgnnnnnnncaacttacaaaatagaaataagttatttttcgtagatgagaaattacgaagtatgttgatcacttgatttgaa |
100 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43831706 |
atgcaagagtaatatttacgtttttttcaacttacaaaatagaaataagttatttttcgtagatgagaaattacgaagtatgttgatcacttgatttgaa |
43831607 |
T |
|
| Q |
101 |
attacaactattggttttgatttgaaaccattttgatgaa |
140 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
43831606 |
attagaactattggttttgatttgaaaccattttgatgaa |
43831567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 145 - 344
Target Start/End: Complemental strand, 34804231 - 34804032
Alignment:
| Q |
145 |
cttcaatgctttcaatttattttatgataaaaatgcaatggaattttgcaggtgcaactttgagcaaggggtttaacagaggattagggacattgtcagc |
244 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
34804231 |
cttcaatgctttcaatttattatatgataaaaatgcaatggaatttgacaggggcaactctgagcaaggggtttaacagaggattagggacattctcagc |
34804132 |
T |
|
| Q |
245 |
tggaggacttgctgttggagtgggagagttatcagcattggctggagaatgggaagaaattatagttattatcactacattcattgttggattctgtgct |
344 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
34804131 |
tggaggacttgctgttggaatgggagagttatcagcattggctgaagaatgggaagaaattatagttattagtagtacattcattgttggattctgtgct |
34804032 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 145 - 344
Target Start/End: Complemental strand, 4999422 - 4999223
Alignment:
| Q |
145 |
cttcaatgctttcaatttattttatgataaaaatgcaatggaattttgcaggtgcaactttgagcaaggggtttaacagaggattagggacattgtcagc |
244 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||| ||||| |
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| T |
4999422 |
cttcaatgctttcaatttattatatgataaaaatgcaatggaatttgacaggggcaactctgagcaaggggtttaacagagtattagggacattctcagc |
4999323 |
T |
|
| Q |
245 |
tggaggacttgctgttggagtgggagagttatcagcattggctggagaatgggaagaaattatagttattatcactacattcattgttggattctgtgct |
344 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
4999322 |
tggaagacttgctgttggaatgggagagttatcagcattggctggagaatgggaagaaattatagttattagtagtacattcattgttggattctgtgct |
4999223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 31807256 - 31807294
Alignment:
| Q |
219 |
aacagaggattagggacattgtcagctggaggacttgct |
257 |
Q |
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||||||||||||||||| || |||||||||||||||||| |
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| T |
31807256 |
aacagaggattagggactttatcagctggaggacttgct |
31807294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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