View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12933_high_1 (Length: 379)
Name: NF12933_high_1
Description: NF12933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12933_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 12736605 - 12736265
Alignment:
| Q |
30 |
cagaagacatggacacttctaggacaacctattatttgtccgcgacgagacctggttcggaggtttcagccgagattgcagccgggcttgcggcatcatc |
129 |
Q |
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| T |
12736605 |
cagaagacatggacacttctaggacaacctattatttgtccgcgacaagacctggttcggaggtttcagccgagattgcagccgcgcttgcggcgtcatc |
12736506 |
T |
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| Q |
130 |
cattgcattcagaaacattgatcctggatattctagtattcttcttgctagggctaaacgggtatacatttatttaattatgtcttataattttnnnnnn |
229 |
Q |
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| T |
12736505 |
cattgctttcagaaacattaatcgtggatattctaggattcttcttgctagggctaaacgggtatacatttatttaattatgtcaaagaaagtaactttc |
12736406 |
T |
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| Q |
230 |
ntattaatggtagcaatttatttccattgctgatattttatttctcaaattgcaactaattattatatctctataataatatttaggtatttgactttgc |
329 |
Q |
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| T |
12736405 |
tcaaatttggtagcaatttatttccattgctgatattttatttctcaaattgcaactaattattatatctctataataatatttaggtatttgactttgc |
12736306 |
T |
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| Q |
330 |
aaattatcaccgtgggtcttacaataattccacaggttctg |
370 |
Q |
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| T |
12736305 |
aaattatcaccgtgggtcttacaataatgccataggttctg |
12736265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 12765896 - 12765719
Alignment:
| Q |
30 |
cagaagacatggacacttctaggacaacctattatttgtccgcgacgagacctggttcggaggtttcagccgagattgcagccgggcttgcggcatcatc |
129 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||| | || || |||||||||||||||||||||||||| |||| |||||||| ||||| |
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| T |
12765896 |
cagaagacatggacacttctagaacaacctattatgtgtccgaaaataggccaggttcggaggtttcagccgagattgcggccgcacttgcggcgtcatc |
12765797 |
T |
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| Q |
130 |
cattgcattcagaaacattgatcctggatattctagtattcttcttgctagggctaaacgggtatacatttatttaat |
207 |
Q |
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| T |
12765796 |
cattgcatttagaaaaattgatgatcaatattctaatgtccttcttgctagggctaaacaggtatatatttatttaat |
12765719 |
T |
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